RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CLPSL1A2RUU4 121 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 DUSP14O95147 198 aaKnown RBP6.6□□□□□ -1.35
USP40-203ENST00000427112 LAGE3Q14657 143 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 TMEM262E9PQX1 116 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 IGF2-ASQ6U949 168 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 C9JAW5 83 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 H3BUX3 64 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 KHDC1LQ5JSQ8 128 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 ZNF815PA8K554 130 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 PAX8Q06710 450 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 ZNF56Q15929 161 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 ZFP2Q6ZN57 461 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 OR11H6Q8NGC7 330 aa6.59□□□□□ -1.35
USP40-203ENST00000427112 A6NJY4 79 aa6.59□□□□□ -1.36
USP40-203ENST00000427112 CD7P09564 240 aa6.59□□□□□ -1.36
USP40-203ENST00000427112 Q6AWC8 147 aa6.59□□□□□ -1.36
USP40-203ENST00000427112 ZNF493Q6ZR52 646 aa6.59□□□□□ -1.36
USP40-203ENST00000427112 RNASE1P07998 156 aaKnown RBP6.58□□□□□ -1.36
USP40-203ENST00000427112 LYPD1Q8N2G4 141 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 C8orf31Q8N9H6 132 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 ZFAND3Q9H8U3 227 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 LINC01549A6NIU2 74 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 K7ENP7 123 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 VCX2Q9H322 139 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 ZNF580Q9UK33 172 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 GCN1Q92616 2671 aaKnown RBP6.58□□□□□ -1.36
USP40-203ENST00000427112 CEMP1Q6PRD7 247 aaPredicted RBP6.58□□□□□ -1.36
USP40-203ENST00000427112 C2orf66Q6UXQ4 117 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 NPBQ8NG41 125 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 EEF1AKMT3Q96AZ1 226 aa6.58□□□□□ -1.36
USP40-203ENST00000427112 TRAV41A0A0B4J266 112 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 IGHV7-4-1A0A0J9YVY3 117 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 M0QXV9 152 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 PDE6HQ13956 83 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 C12orf74Q32Q52 190 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 PRADC1Q9BSG0 188 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 NPFFO15130 113 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 P0DMU3 169 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 FAM231AP0DMU4 169 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 FAM231CP0DMU5 169 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 GNLYP22749 145 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 CEND1Q8N111 149 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 LY6G5BQ8NDX9 201 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 OR10J6PQ8NGY7 276 aa6.57□□□□□ -1.36
USP40-203ENST00000427112 NXT2Q9NPJ8 142 aaKnown RBP6.57□□□□□ -1.36
USP40-203ENST00000427112 TRAV8-4A0A0B4J246 113 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 CENPVL3A0A0U1RRI6 287 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 IFITM1P13164 125 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 UFSP1Q6NVU6 142 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 OR9G4Q8NGQ1 327 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 KIR2DL4Q99706 377 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 IGHV3OR16-12A0A075B7B8 117 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 ODF3BA8MYP8 253 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 IGLL5B9A064 214 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 SPINK13Q1W4C9 94 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 DEFB136Q30KP8 78 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 PSMG4Q5JS54 123 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 FAM159AQ6UWV7 190 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 Q8N8P6 123 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 GATD1Q8NB37 220 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 TP53TG1Q9Y2A0 90 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 NRACQ8N912 160 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 RASL10AQ92737 203 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 DLX4Q92988 240 aaPredicted RBP6.56□□□□□ -1.36
USP40-203ENST00000427112 RHPN1-AS1Q9BWJ2 59 aa6.56□□□□□ -1.36
USP40-203ENST00000427112 IGHV4-61A0A0C4DH41 118 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 A8MZ25 164 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 RPS20P60866 119 aaKnown RBP6.55□□□□□ -1.36
USP40-203ENST00000427112 SUMO2P61956 95 aaKnown RBP6.55□□□□□ -1.36
USP40-203ENST00000427112 RPL32P62910 135 aaKnown RBP6.55□□□□□ -1.36
USP40-203ENST00000427112 SRSF1Q07955 248 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP40-203ENST00000427112 PKIGQ9Y2B9 76 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 U3KQK5 164 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 PROK1P58294 105 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 SRSF2Q01130 221 aaKnown RBP6.55□□□□□ -1.36
USP40-203ENST00000427112 PRB1P04280 392 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 ASIPP42127 132 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 SMIM2Q9BVW6 85 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 MDFICQ9P1T7 246 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 Q9UF83 564 aa6.55□□□□□ -1.36
USP40-203ENST00000427112 IGHV3-16A0A0C4DH30 117 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 IGHV3-38A0A0C4DH36 116 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 FAM110DQ8TAY7 271 aaPredicted RBP6.54□□□□□ -1.36
USP40-203ENST00000427112 TRAV2A0A0B4J234 112 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 OR13C6PQ8NH95 151 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 SIRPDQ9H106 197 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 FLNAP21333 2647 aaKnown RBP6.54□□□□□ -1.36
USP40-203ENST00000427112 F8W1H4 67 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 USP24Q9UPU5 2620 aa6.54□□□□□ -1.36
USP40-203ENST00000427112 C11orf86A6NJI1 115 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 M0R1W7 72 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 C15orf53Q8NAA6 179 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 RNF5Q99942 180 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 A0A087WX48 190 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 ATP5LO75964 103 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 LINC01559Q495D7 138 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 Q6ZSV7 163 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 ZNF625Q96I27 306 aaPredicted RBP6.53□□□□□ -1.36
USP40-203ENST00000427112 DAND5Q8N907 189 aa6.53□□□□□ -1.36
USP40-203ENST00000427112 CCDC179H3BU77 68 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms