RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SRSF9Q13242 221 aaKnown RBP eCLIP15.45■□□□□ 0.06
CLK3-202ENST00000395066 CFAP126Q5VTH2 177 aa15.45■□□□□ 0.06
CLK3-202ENST00000395066 COX6B1P14854 86 aa15.44■□□□□ 0.06
CLK3-202ENST00000395066 C10orf105Q8TEF2 133 aa15.44■□□□□ 0.06
CLK3-202ENST00000395066 DAZ1Q9NQZ3 744 aaKnown RBP15.44■□□□□ 0.06
CLK3-202ENST00000395066 USP9XQ93008 2570 aaPredicted RBP15.44■□□□□ 0.06
CLK3-202ENST00000395066 UBE2D1P51668 147 aa15.44■□□□□ 0.06
CLK3-202ENST00000395066 C1QTNF4Q9BXJ3 329 aa15.44■□□□□ 0.06
CLK3-202ENST00000395066 LINC00315P59091 139 aa15.43■□□□□ 0.06
CLK3-202ENST00000395066 RPL39P62891 51 aaKnown RBP15.43■□□□□ 0.06
CLK3-202ENST00000395066 FOXI1Q12951 378 aa15.43■□□□□ 0.06
CLK3-202ENST00000395066 SMCPP49901 116 aaPredicted RBP15.43■□□□□ 0.06
CLK3-202ENST00000395066 ATP5J2P56134 94 aa15.43■□□□□ 0.06
CLK3-202ENST00000395066 KLHL30-AS1Q8NEE0 82 aa15.43■□□□□ 0.06
CLK3-202ENST00000395066 NRGNQ92686 78 aa15.43■□□□□ 0.06
CLK3-202ENST00000395066 TRAV12-2A0A075B6T6 113 aa15.42■□□□□ 0.06
CLK3-202ENST00000395066 USP9YO00507 2555 aaPredicted RBP15.42■□□□□ 0.06
CLK3-202ENST00000395066 TSPAN13O95857 204 aa15.42■□□□□ 0.06
CLK3-202ENST00000395066 KIF25-AS1Q9Y6Z4 181 aa15.42■□□□□ 0.06
CLK3-202ENST00000395066 POLQO75417 2590 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 LOC107984156A0A0G2JMH3 177 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 F5H697 171 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 TSHBP01222 138 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 CRYGDP07320 174 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 CD7P09564 240 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 PSMB2P49721 201 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 FAM74A4Q5TZK3 123 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 SFTA2Q6UW10 78 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 ARL17AQ8IVW1 177 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 ATP6V0E2Q8NHE4 81 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 PPP1R17O96001 155 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 IGLV1-40P01703 118 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 ZNF688P0C7X2 276 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 MED14OSP0DP75 135 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 SUMO4Q6EEV6 95 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 FAM159AQ6UWV7 190 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 APRG1Q8IVJ8 170 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 TP53TG1Q9Y2A0 90 aa15.41■□□□□ 0.06
CLK3-202ENST00000395066 CENPEQ02224 2701 aa15.4■□□□□ 0.06
CLK3-202ENST00000395066 ZFP2Q6ZN57 461 aa15.39■□□□□ 0.05
CLK3-202ENST00000395066 DCANP1Q8TF63 244 aa15.39■□□□□ 0.05
CLK3-202ENST00000395066 CUBNO60494 3623 aa15.39■□□□□ 0.05
CLK3-202ENST00000395066 CREBBPQ92793 2442 aa15.39■□□□□ 0.05
CLK3-202ENST00000395066 C11orf86A6NJI1 115 aa15.39■□□□□ 0.05
CLK3-202ENST00000395066 KLLNB2CW77 178 aa15.39■□□□□ 0.05
CLK3-202ENST00000395066 MSMBP08118 114 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 SYT8Q8NBV8 401 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 IGLV4-69A0A075B6H9 119 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 H3BUA1 57 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 UBE2D3P61077 147 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 UBE2D2P62837 147 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 NFE4Q86UQ8 179 aa15.38■□□□□ 0.05
CLK3-202ENST00000395066 TCTEX1D4Q5JR98 221 aa15.37■□□□□ 0.05
CLK3-202ENST00000395066 PRORYQ9H606 182 aa15.37■□□□□ 0.05
CLK3-202ENST00000395066 CKS1BP61024 79 aa15.37■□□□□ 0.05
CLK3-202ENST00000395066 HERVK_113P61574 105 aa15.37■□□□□ 0.05
CLK3-202ENST00000395066 ZNF418Q8TF45 676 aaPredicted RBP15.37■□□□□ 0.05
CLK3-202ENST00000395066 MDFICQ9P1T7 246 aa15.37■□□□□ 0.05
CLK3-202ENST00000395066 A0A0J9YY99 117 aa15.36■□□□□ 0.05
CLK3-202ENST00000395066 PAPPA-AS1Q5QFB9 102 aa15.36■□□□□ 0.05
CLK3-202ENST00000395066 IGHV4-59P01825 116 aa15.36■□□□□ 0.05
CLK3-202ENST00000395066 CFHR3Q02985 330 aa15.36■□□□□ 0.05
CLK3-202ENST00000395066 POM121L12Q8N7R1 296 aa15.36■□□□□ 0.05
CLK3-202ENST00000395066 DUX5Q96PT3 197 aa15.36■□□□□ 0.05
CLK3-202ENST00000395066 NXPH4O95158 308 aa15.35■□□□□ 0.05
CLK3-202ENST00000395066 LYRM7Q5U5X0 104 aa15.35■□□□□ 0.05
CLK3-202ENST00000395066 NDUFA11Q86Y39 141 aa15.35■□□□□ 0.05
CLK3-202ENST00000395066 CDIP1Q9H305 208 aa15.35■□□□□ 0.05
CLK3-202ENST00000395066 ZNF256Q9Y2P7 627 aaPredicted RBP15.35■□□□□ 0.05
CLK3-202ENST00000395066 IGIPA6NJ69 53 aa15.34■□□□□ 0.05
CLK3-202ENST00000395066 PMVKQ15126 192 aa15.34■□□□□ 0.05
CLK3-202ENST00000395066 MAPK1IP1LQ8NDC0 245 aa15.34■□□□□ 0.05
CLK3-202ENST00000395066 MYO18BQ8IUG5 2567 aa15.34■□□□□ 0.05
CLK3-202ENST00000395066 SDHAF1A6NFY7 115 aa15.34■□□□□ 0.05
CLK3-202ENST00000395066 OPRPNQ99935 248 aaPredicted RBP15.34■□□□□ 0.05
CLK3-202ENST00000395066 POLR2KP53803 58 aaKnown RBP15.33■□□□□ 0.05
CLK3-202ENST00000395066 PTH2Q96A98 100 aa15.33■□□□□ 0.05
CLK3-202ENST00000395066 DOPEY1Q5JWR5 2465 aa15.33■□□□□ 0.05
CLK3-202ENST00000395066 IGHV4OR15-8A0A075B7B6 117 aa15.33■□□□□ 0.04
CLK3-202ENST00000395066 A0A087WW49 117 aa15.33■□□□□ 0.04
CLK3-202ENST00000395066 RPL32P62910 135 aaKnown RBP15.33■□□□□ 0.04
CLK3-202ENST00000395066 IGSF10Q6WRI0 2623 aa15.33■□□□□ 0.04
CLK3-202ENST00000395066 BRI3O95415 125 aa15.32■□□□□ 0.04
CLK3-202ENST00000395066 ID1P41134 155 aa15.32■□□□□ 0.04
CLK3-202ENST00000395066 SPINK13Q1W4C9 94 aa15.32■□□□□ 0.04
CLK3-202ENST00000395066 TSPEAR-AS2P59090 65 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 DEFB112Q30KQ8 113 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 PIEZO1Q92508 2521 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 MXRA5Q9NR99 2828 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 TCL1BO95988 128 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 IGHV3-30P01768 117 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 IGHV3-30-5P0DP03 117 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 PSMB8P28062 276 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 FHL3Q13643 280 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 Q8N1Y9 231 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 TMEM141Q96I45 108 aa15.31■□□□□ 0.04
CLK3-202ENST00000395066 TRBV7-9A0A0J9YWB2 115 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 CFC1BP0CG36 223 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 CFC1P0CG37 223 aa15.3■□□□□ 0.04
CLK3-202ENST00000395066 ZNF56Q15929 161 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms