RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RNF185Q96GF1 192 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 RPL19P84098 196 aaKnown RBP4.87□□□□□ -1.63
LIMA1-202ENST00000394943 MUC21Q5SSG8 566 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 C15orf54Q8N8G6 183 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 TMEM208Q9BTX3 173 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 PRO0255Q9UI72 69 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 K7EP13 123 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 SCO1O75880 301 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 PRB4P10163 310 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-202ENST00000394943 LYZL1Q6UWQ5 148 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 NUP35Q8NFH5 326 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 OR2D3Q8NGH3 330 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 OR10AG1Q8NH19 301 aa4.87□□□□□ -1.63
LIMA1-202ENST00000394943 KLK5Q9Y337 293 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-202ENST00000394943 CLRN3Q8NCR9 226 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 DAZAP1Q96EP5 407 aaKnown RBP4.86□□□□□ -1.63
LIMA1-202ENST00000394943 PGLYRP4Q96LB8 373 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 HYDINQ4G0P3 5121 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 PHOX2AO14813 284 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 GTSF1LQ9H1H1 148 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 DEFB131BA0A096LNP1 70 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 A0A096LPF7 62 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 H3BVH4 76 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 ZNF876PQ49A33 203 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 ZNF479Q96JC4 524 aa4.86□□□□□ -1.63
LIMA1-202ENST00000394943 MRPL16Q9NX20 251 aaKnown RBP4.86□□□□□ -1.63
LIMA1-202ENST00000394943 M0QY20 66 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 TRGC1P0CF51 173 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 ERVFC1-1P60608 527 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 MRAP2Q96G30 205 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 MRPS16Q9Y3D3 137 aaKnown RBP4.85□□□□□ -1.63
LIMA1-202ENST00000394943 TRBV24-1A0A075B6N3 115 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 S100A1P23297 94 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 COX19Q49B96 90 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 Q6ZSN1 163 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 AP1S3Q96PC3 154 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 DPH3P1Q9H4G8 78 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 A0A1B0GUT8 65 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 K7EQD1 137 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 MT-ND4LP03901 98 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 UBE2D3P61077 147 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 UBE2D2P62837 147 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 KMT2AQ03164 3969 aa4.85□□□□□ -1.63
LIMA1-202ENST00000394943 TRGV1A0A0A0MS02 117 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 HIGD1CA8MV81 97 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 RHOHQ15669 191 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 BTF3L4Q96K17 158 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 DNAH11Q96DT5 4516 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 LCE6AA0A183 80 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 GAGE12BA1L429 117 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 F8W036 122 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 J3KRW8 73 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 GAGE7O76087 117 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 GAGE12FP0CL80 117 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 GAGE12GP0CL81 117 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 GAGE12IP0CL82 117 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 NTF3P20783 257 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 SVBPQ8N300 66 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 SAMD10Q9BYL1 202 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 HHLA3Q9XRX5 114 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 LAMTOR2Q9Y2Q5 125 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 PHLDA3Q9Y5J5 127 aa4.84□□□□□ -1.63
LIMA1-202ENST00000394943 IGHV3OR16-12A0A075B7B8 117 aa4.84□□□□□ -1.64
LIMA1-202ENST00000394943 GRIFINA4D1Z8 144 aa4.84□□□□□ -1.64
LIMA1-202ENST00000394943 TMEM88Q6PEY1 159 aa4.84□□□□□ -1.64
LIMA1-202ENST00000394943 DEFB4AO15263 64 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 SNAPINO95295 136 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 NCR2O95944 276 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 RIGQ13278 110 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 ADIRFQ15847 76 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 TMEM97Q5BJF2 176 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 Q6ZR54 194 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 SLC25A29Q8N8R3 303 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 NRACQ8N912 160 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 OR4C5Q8NGB2 326 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 KMT2CQ8NEZ4 4911 aaKnown RBP4.83□□□□□ -1.64
LIMA1-202ENST00000394943 C7orf77A4D0Y5 90 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 GZMBP10144 247 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 RAB4AP20338 218 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 FAM104BQ5XKR9 115 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 CHCHD7Q9BUK0 85 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 GNB1LQ9BYB4 327 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 PKD1P98161 4303 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 S100A8P05109 93 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 NEXN-AS1Q8NBZ9 246 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 LINC00476Q8WZB0 136 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 NAGKQ9UJ70 344 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 HECTD4Q9Y4D8 3996 aa4.83□□□□□ -1.64
LIMA1-202ENST00000394943 DNAH8Q96JB1 4490 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 H7C423 109 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 POLR2KP53803 58 aaKnown RBP4.82□□□□□ -1.64
LIMA1-202ENST00000394943 ICOSQ9Y6W8 199 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 IGLV2-18A0A075B6J9 118 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 NPSP0C0P6 89 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 S100A4P26447 101 aaKnown RBP4.82□□□□□ -1.64
LIMA1-202ENST00000394943 HBBP68871 147 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 TMEM136Q6ZRR5 245 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 JPT2Q9H910 190 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 MSRB1Q9NZV6 116 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 TRBV27A0A0K0K1C4 114 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 179.5 ms