RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 K7EQG2 157 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 ZNF256Q9Y2P7 627 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-201ENST00000341247 NACAE9PAV3 2078 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 DEFB131AP59861 70 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 C2orf66Q6UXQ4 117 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 IGHV3-73A0A0B4J1V6 119 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 LINC01546A6NGU7 62 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 ELANEP08246 267 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 GCSHP23434 173 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 ZNF56Q15929 161 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 ADAMTSL5Q6ZMM2 481 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 JMJD1CQ15652 2540 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 UBE2V1Q13404 147 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 SUMO4Q6EEV6 95 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 OR4C5Q8NGB2 326 aa7.69□□□□□ -1.18
LIMA1-201ENST00000341247 CDKN1BP46527 198 aa7.68□□□□□ -1.18
LIMA1-201ENST00000341247 UBE2E2Q96LR5 201 aa7.68□□□□□ -1.18
LIMA1-201ENST00000341247 HECTD1Q9ULT8 2610 aa7.68□□□□□ -1.18
LIMA1-201ENST00000341247 RPL39P62891 51 aaKnown RBP7.68□□□□□ -1.18
LIMA1-201ENST00000341247 SETXQ7Z333 2677 aaKnown RBP7.68□□□□□ -1.18
LIMA1-201ENST00000341247 APRG1Q8IVJ8 170 aa7.68□□□□□ -1.18
LIMA1-201ENST00000341247 ZNF580Q9UK33 172 aa7.68□□□□□ -1.18
LIMA1-201ENST00000341247 VWFP04275 2813 aa7.68□□□□□ -1.18
LIMA1-201ENST00000341247 DUSP14O95147 198 aaKnown RBP7.68□□□□□ -1.18
LIMA1-201ENST00000341247 FSHBP01225 129 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 ORMDL2Q53FV1 153 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 MAPKAPK5-AS1Q8N8E1 139 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 KLHL30-AS1Q8NEE0 82 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 C2CD3Q4AC94 2353 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 A0A087WX48 190 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 LINC00315P59091 139 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 IGHV3-16A0A0C4DH30 117 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 ZMAT4Q9H898 229 aa7.67□□□□□ -1.18
LIMA1-201ENST00000341247 CHTOPQ9Y3Y2 248 aaKnown RBP7.67□□□□□ -1.18
LIMA1-201ENST00000341247 H3BUT2 72 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 TMEM61Q8N0U2 210 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 KIF25-AS1Q9Y6Z4 181 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 FASNP49327 2511 aaKnown RBP7.66□□□□□ -1.18
LIMA1-201ENST00000341247 TRRAPQ9Y4A5 3859 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 IGHV1OR15-1A0A075B7D0 117 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 ZNF876PQ49A33 203 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 DLX4Q92988 240 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-201ENST00000341247 C20orf78Q9BR46 151 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 TP53TG1Q9Y2A0 90 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 SDHAF1A6NFY7 115 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 PRSS47A8MTI9 375 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 K7ERJ3 54 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 RBMY1A1P0DJD3 496 aaKnown RBP7.66□□□□□ -1.18
LIMA1-201ENST00000341247 RBMY1CP0DJD4 496 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 HSD52Q0P140 79 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 RBMY1FQ15415 496 aaKnown RBP7.66□□□□□ -1.18
LIMA1-201ENST00000341247 OR9G4Q8NGQ1 327 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 TOMM6Q96B49 74 aa7.66□□□□□ -1.18
LIMA1-201ENST00000341247 TRBV25-1A0A075B6N4 114 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 FXYD2P54710 66 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 CHAC1Q9BUX1 264 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 TRBV7-9A0A0J9YWB2 115 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 TMEM89A2RUT3 159 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 PRSS29PA6NIE9 313 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 MED14OSP0DP75 135 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 DYNLRB2Q8TF09 96 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 BAALCQ8WXS3 180 aa7.65□□□□□ -1.18
LIMA1-201ENST00000341247 LINC01619G3V211 115 aa7.65□□□□□ -1.19
LIMA1-201ENST00000341247 H7C1H1 209 aa7.65□□□□□ -1.19
LIMA1-201ENST00000341247 OPRPNQ99935 248 aaPredicted RBP7.65□□□□□ -1.19
LIMA1-201ENST00000341247 F8VRH5 84 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 PROK1P58294 105 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 LGALS9O00182 355 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 P0DMU3 169 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 FAM231AP0DMU4 169 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 FAM231CP0DMU5 169 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 SEC11AP67812 179 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 SAMD13Q5VXD3 122 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 JMJD8Q96S16 334 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 IGHV3OR16-12A0A075B7B8 117 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 A6NDN8 102 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 CD300EQ496F6 205 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-201ENST00000341247 KIR2DL4Q99706 377 aa7.64□□□□□ -1.19
LIMA1-201ENST00000341247 AMTNQ6UX39 209 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 ZFP2Q6ZN57 461 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 FOXI2Q6ZQN5 318 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 NEXN-AS1Q8NBZ9 246 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 NXPH4O95158 308 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 Q6ZSV7 163 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 SYT8Q8NBV8 401 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 RNASE8Q8TDE3 154 aaKnown RBP7.63□□□□□ -1.19
LIMA1-201ENST00000341247 C9orf85Q96MD7 179 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 NHP2Q9NX24 153 aaKnown RBP7.63□□□□□ -1.19
LIMA1-201ENST00000341247 CYSLTR1Q9Y271 337 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 RBMY1BA6NDE4 496 aaKnown RBP7.63□□□□□ -1.19
LIMA1-201ENST00000341247 RBMY1EA6NEQ0 496 aaKnown RBP7.63□□□□□ -1.19
LIMA1-201ENST00000341247 CRYGDP07320 174 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 RBMY1DP0C7P1 496 aaKnown RBP7.63□□□□□ -1.19
LIMA1-201ENST00000341247 HLA-DRB4P13762 266 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 HLA-DRB4X5D2U9 266 aa7.63□□□□□ -1.19
LIMA1-201ENST00000341247 PLNP26678 52 aa7.62□□□□□ -1.19
LIMA1-201ENST00000341247 OR11H12B2RN74 326 aa7.62□□□□□ -1.19
LIMA1-201ENST00000341247 OR11H2Q8NH07 326 aa7.62□□□□□ -1.19
LIMA1-201ENST00000341247 DNAJC9-AS1A6NH13 148 aa7.62□□□□□ -1.19
LIMA1-201ENST00000341247 TSHBP01222 138 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms