RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 GATD1Q8NB37 220 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 CRPP02741 224 aa12.47□□□□□ -0.41
NPHP3-201ENST00000337331 Q6ZQT7 251 aa12.47□□□□□ -0.41
NPHP3-201ENST00000337331 ZNF493Q6ZR52 646 aa12.47□□□□□ -0.41
NPHP3-201ENST00000337331 RITA1Q96K30 269 aa12.47□□□□□ -0.41
NPHP3-201ENST00000337331 IGHV3-16A0A0C4DH30 117 aa12.46□□□□□ -0.41
NPHP3-201ENST00000337331 C6orf226Q5I0X4 101 aa12.46□□□□□ -0.41
NPHP3-201ENST00000337331 J3QQQ9 107 aa12.46□□□□□ -0.41
NPHP3-201ENST00000337331 SPRY2O43597 315 aa12.46□□□□□ -0.41
NPHP3-201ENST00000337331 SETD2Q9BYW2 2564 aaPredicted RBP12.46□□□□□ -0.41
NPHP3-201ENST00000337331 F6UB75 175 aa12.46□□□□□ -0.42
NPHP3-201ENST00000337331 SPRY4Q9C004 299 aa12.46□□□□□ -0.42
NPHP3-201ENST00000337331 IGHV1OR15-1A0A075B7D0 117 aa12.46□□□□□ -0.42
NPHP3-201ENST00000337331 K7EIM0 57 aa12.46□□□□□ -0.42
NPHP3-201ENST00000337331 CMC4P56277 68 aaPredicted RBP12.46□□□□□ -0.42
NPHP3-201ENST00000337331 MSMPQ1L6U9 139 aa12.46□□□□□ -0.42
NPHP3-201ENST00000337331 LINC00694P0DN24 101 aa12.45□□□□□ -0.42
NPHP3-201ENST00000337331 EIF4EBP1Q13541 118 aaPredicted RBP12.45□□□□□ -0.42
NPHP3-201ENST00000337331 TMEM131Q92545 1883 aa12.45□□□□□ -0.42
NPHP3-201ENST00000337331 DEFB130BP0DP73 79 aa12.45□□□□□ -0.42
NPHP3-201ENST00000337331 DEFB130AP0DP74 79 aa12.45□□□□□ -0.42
NPHP3-201ENST00000337331 UTF1Q5T230 341 aa12.45□□□□□ -0.42
NPHP3-201ENST00000337331 PRO3102Q9H379 93 aa12.45□□□□□ -0.42
NPHP3-201ENST00000337331 CRYGCP07315 174 aa12.44□□□□□ -0.42
NPHP3-201ENST00000337331 JPT2Q9H910 190 aa12.44□□□□□ -0.42
NPHP3-201ENST00000337331 ATG2AQ2TAZ0 1938 aa12.44□□□□□ -0.42
NPHP3-201ENST00000337331 S100A7L2Q5SY68 101 aa12.44□□□□□ -0.42
NPHP3-201ENST00000337331 SEM1Q6ZVN7 128 aa12.44□□□□□ -0.42
NPHP3-201ENST00000337331 HERVK_113P63121 156 aa12.44□□□□□ -0.42
NPHP3-201ENST00000337331 I3L2K1 104 aa12.43□□□□□ -0.42
NPHP3-201ENST00000337331 VPREB3Q9UKI3 123 aa12.43□□□□□ -0.42
NPHP3-201ENST00000337331 HHLA3Q9XRX5 114 aa12.43□□□□□ -0.42
NPHP3-201ENST00000337331 CEP295Q9C0D2 2601 aa12.43□□□□□ -0.42
NPHP3-201ENST00000337331 TMEM141Q96I45 108 aa12.42□□□□□ -0.42
NPHP3-201ENST00000337331 A0A096LNJ9 63 aa12.42□□□□□ -0.42
NPHP3-201ENST00000337331 I3L3M4 83 aa12.41□□□□□ -0.42
NPHP3-201ENST00000337331 CFHR4Q92496 578 aa12.41□□□□□ -0.42
NPHP3-201ENST00000337331 IGKV1D-37A0A075B6S9 117 aa12.41□□□□□ -0.42
NPHP3-201ENST00000337331 IGHV3-38A0A0C4DH36 116 aa12.41□□□□□ -0.42
NPHP3-201ENST00000337331 GNRH2O43555 120 aa12.41□□□□□ -0.42
NPHP3-201ENST00000337331 C1orf229Q6ZS94 237 aaPredicted RBP12.41□□□□□ -0.42
NPHP3-201ENST00000337331 MUSTN1Q8IVN3 82 aa12.41□□□□□ -0.42
NPHP3-201ENST00000337331 IGHV7-4-1A0A0J9YVY3 117 aa12.4□□□□□ -0.42
NPHP3-201ENST00000337331 CRLF1O75462 422 aa12.4□□□□□ -0.42
NPHP3-201ENST00000337331 USP9XQ93008 2570 aaPredicted RBP12.4□□□□□ -0.42
NPHP3-201ENST00000337331 IGHV7-81A0A0B4J1V7 117 aa12.4□□□□□ -0.42
NPHP3-201ENST00000337331 IGHG4P01861 327 aa12.4□□□□□ -0.42
NPHP3-201ENST00000337331 PTPRSQ13332 1948 aa12.4□□□□□ -0.42
NPHP3-201ENST00000337331 GHRHP01286 108 aa12.4□□□□□ -0.42
NPHP3-201ENST00000337331 LOC107984640A0A0U1RRK4 108 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 TRBV10-2A0A0K0K1G8 114 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 CTSGP08311 255 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 AJUBAQ96IF1 538 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 CENPVL3A0A0U1RRI6 287 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 WI2-2373I1.2A0A1W2PRP0 233 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 LEPROTO15243 131 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 CFHR3Q02985 330 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 SMIM9A6NGZ8 99 aa12.39□□□□□ -0.43
NPHP3-201ENST00000337331 NCKAP5O14513 1909 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 IGLV11-55A0A075B6I3 123 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 TRBV7-3A0A075B6L6 115 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 ZNRF2Q8NHG8 242 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 NDUFA12Q9UI09 145 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 GAS8-AS1O95177 125 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 CRIP1P50238 77 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 IGLV1-47P01700 117 aa12.38□□□□□ -0.43
NPHP3-201ENST00000337331 HOXB4P17483 251 aaPredicted RBP12.38□□□□□ -0.43
NPHP3-201ENST00000337331 MYCNOSP40205 109 aa12.37□□□□□ -0.43
NPHP3-201ENST00000337331 CITED2Q99967 270 aaPredicted RBP12.37□□□□□ -0.43
NPHP3-201ENST00000337331 USP9YO00507 2555 aaPredicted RBP12.37□□□□□ -0.43
NPHP3-201ENST00000337331 RPL39LQ96EH5 51 aaKnown RBP12.37□□□□□ -0.43
NPHP3-201ENST00000337331 MRPS12O15235 138 aaKnown RBP12.37□□□□□ -0.43
NPHP3-201ENST00000337331 IGLC6P0CF74 106 aa12.37□□□□□ -0.43
NPHP3-201ENST00000337331 CLEC2BQ92478 149 aa12.37□□□□□ -0.43
NPHP3-201ENST00000337331 A0A1B0GX51 115 aa12.36□□□□□ -0.43
NPHP3-201ENST00000337331 LINC01619G3V211 115 aa12.36□□□□□ -0.43
NPHP3-201ENST00000337331 Q71RC1 249 aaPredicted RBP12.36□□□□□ -0.43
NPHP3-201ENST00000337331 C11orf86A6NJI1 115 aa12.36□□□□□ -0.43
NPHP3-201ENST00000337331 UQCRQO14949 82 aa12.36□□□□□ -0.43
NPHP3-201ENST00000337331 NDUFA7O95182 113 aa12.36□□□□□ -0.43
NPHP3-201ENST00000337331 DNAJC30Q96LL9 226 aa12.36□□□□□ -0.43
NPHP3-201ENST00000337331 MKI67P46013 3256 aaKnown RBP12.35□□□□□ -0.43
NPHP3-201ENST00000337331 LENEPQ9Y5L5 61 aa12.35□□□□□ -0.43
NPHP3-201ENST00000337331 BUB3O43684 328 aa12.35□□□□□ -0.43
NPHP3-201ENST00000337331 RNASE13Q5GAN3 156 aaKnown RBP12.35□□□□□ -0.43
NPHP3-201ENST00000337331 ARHGAP32A7KAX9 2087 aa12.35□□□□□ -0.43
NPHP3-201ENST00000337331 IGLV2-23P01705 113 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 C3orf22Q8N5N4 141 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 PIFOQ8TCI5 191 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 BAALCQ8WXS3 180 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 SMCPP49901 116 aaPredicted RBP12.34□□□□□ -0.43
NPHP3-201ENST00000337331 CSDC2Q9Y534 153 aaKnown RBP12.34□□□□□ -0.43
NPHP3-201ENST00000337331 TRAV12-1A0A0B4J245 112 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 TEX22C9J3V5 150 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 NBL1P41271 181 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 BLCAPP62952 87 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 LAMTOR3Q9UHA4 124 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 hADV29S1A0JD25 119 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 PFN2P35080 140 aa12.34□□□□□ -0.43
NPHP3-201ENST00000337331 NPBQ8NG41 125 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 750 ms