RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 XCL2Q9UBD3 114 aa13.48□□□□□ -0.25
USP39-201ENST00000323701 LOC389332A0A1B0GUA5 103 aa13.47□□□□□ -0.25
USP39-201ENST00000323701 STHQ8IWL8 128 aa13.47□□□□□ -0.25
USP39-201ENST00000323701 C9orf85Q96MD7 179 aa13.47□□□□□ -0.25
USP39-201ENST00000323701 NXPH4O95158 308 aa13.47□□□□□ -0.25
USP39-201ENST00000323701 BATFQ16520 125 aa13.47□□□□□ -0.25
USP39-201ENST00000323701 IFI27P40305 119 aaPredicted RBP13.46□□□□□ -0.25
USP39-201ENST00000323701 HSBP1O75506 76 aa13.45□□□□□ -0.26
USP39-201ENST00000323701 CBY3A6NI87 242 aa13.45□□□□□ -0.26
USP39-201ENST00000323701 OR2K2Q8NGT1 345 aa13.45□□□□□ -0.26
USP39-201ENST00000323701 CLUHP3Q96NS8 147 aa13.45□□□□□ -0.26
USP39-201ENST00000323701 CMYA5Q8N3K9 4069 aa13.45□□□□□ -0.26
USP39-201ENST00000323701 GIG44P09565 113 aaPredicted RBP13.44□□□□□ -0.26
USP39-201ENST00000323701 PCP4P48539 62 aa13.44□□□□□ -0.26
USP39-201ENST00000323701 PRIMA1Q86XR5 153 aa13.44□□□□□ -0.26
USP39-201ENST00000323701 COL6A5A8TX70 2615 aa13.44□□□□□ -0.26
USP39-201ENST00000323701 SPATA45Q537H7 98 aa13.44□□□□□ -0.26
USP39-201ENST00000323701 ATOH7Q8N100 152 aa13.44□□□□□ -0.26
USP39-201ENST00000323701 KIF25-AS1Q9Y6Z4 181 aa13.44□□□□□ -0.26
USP39-201ENST00000323701 NBEAL2Q6ZNJ1 2754 aa13.43□□□□□ -0.26
USP39-201ENST00000323701 LINC00315P59091 139 aa13.43□□□□□ -0.26
USP39-201ENST00000323701 MAJINQ3KP22 176 aa13.43□□□□□ -0.26
USP39-201ENST00000323701 SPATA12Q7Z6I5 190 aa13.43□□□□□ -0.26
USP39-201ENST00000323701 IGHV1-24A0A0C4DH33 117 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 TNFRSF6BO95407 300 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 C21orf62-AS1Q17RA5 79 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 SMIM15Q7Z3B0 74 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 C1orf158Q8N1D5 194 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 NRACQ8N912 160 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 A0A087WWL8 130 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 LINC00173Q6ZV60 143 aa13.42□□□□□ -0.26
USP39-201ENST00000323701 CHCHD1Q96BP2 118 aaKnown RBP13.42□□□□□ -0.26
USP39-201ENST00000323701 INSP01308 110 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 RPL35AP18077 110 aaKnown RBP13.41□□□□□ -0.26
USP39-201ENST00000323701 DEFB125Q8N687 156 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 PRSS3P2Q8NHM4 247 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 LINC01587Q99440 93 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 FAM110AQ9BQ89 295 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 AZU1P20160 251 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 DPH3P1Q9H4G8 78 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 UQCR10Q9UDW1 63 aa13.41□□□□□ -0.26
USP39-201ENST00000323701 PPBPP02775 128 aa13.4□□□□□ -0.26
USP39-201ENST00000323701 AP1S3Q96PC3 154 aa13.4□□□□□ -0.26
USP39-201ENST00000323701 IGHV3OR16-12A0A075B7B8 117 aa13.39□□□□□ -0.27
USP39-201ENST00000323701 MGPP08493 103 aa13.39□□□□□ -0.27
USP39-201ENST00000323701 AP5S1Q9NUS5 200 aa13.39□□□□□ -0.27
USP39-201ENST00000323701 TRGV11A0A075B6L2 103 aa13.39□□□□□ -0.27
USP39-201ENST00000323701 A0A096LNJ9 63 aa13.39□□□□□ -0.27
USP39-201ENST00000323701 IGLC3P0DOY3 106 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 ZNF876PQ49A33 203 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 C11orf72Q8NBR9 251 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 RASL10AQ92737 203 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 RPL39LQ96EH5 51 aaKnown RBP13.38□□□□□ -0.27
USP39-201ENST00000323701 ANKRD39Q53RE8 183 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 C9orf66Q5T8R8 295 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 FA2HQ7L5A8 372 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 ORAOV1Q8WV07 137 aa13.38□□□□□ -0.27
USP39-201ENST00000323701 IGLL1P15814 213 aa13.37□□□□□ -0.27
USP39-201ENST00000323701 CMC4P56277 68 aaPredicted RBP13.37□□□□□ -0.27
USP39-201ENST00000323701 CRYGDP07320 174 aa13.37□□□□□ -0.27
USP39-201ENST00000323701 FAM74A4Q5TZK3 123 aa13.37□□□□□ -0.27
USP39-201ENST00000323701 STPG4Q8N801 248 aa13.37□□□□□ -0.27
USP39-201ENST00000323701 IGLV2-18A0A075B6J9 118 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 C20orf202A1L168 122 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 INSL3P51460 131 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 POM121L12Q8N7R1 296 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 MRAP2Q96G30 205 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 MAP1LC3AQ9H492 121 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 LAMTOR2Q9Y2Q5 125 aa13.36□□□□□ -0.27
USP39-201ENST00000323701 HNRNPA3P51991 378 aaKnown RBP13.35□□□□□ -0.27
USP39-201ENST00000323701 Q6ZN92 141 aa13.35□□□□□ -0.27
USP39-201ENST00000323701 WFDC9Q8NEX5 89 aa13.35□□□□□ -0.27
USP39-201ENST00000323701 LINC00467Q9BRT7 94 aa13.35□□□□□ -0.27
USP39-201ENST00000323701 CSNK1G2-AS1Q8NCQ2 148 aa13.34□□□□□ -0.27
USP39-201ENST00000323701 SUMO4Q6EEV6 95 aa13.34□□□□□ -0.27
USP39-201ENST00000323701 NACAE9PAV3 2078 aa13.33□□□□□ -0.27
USP39-201ENST00000323701 SYT8Q8NBV8 401 aa13.33□□□□□ -0.28
USP39-201ENST00000323701 TMEM70Q9BUB7 260 aa13.33□□□□□ -0.28
USP39-201ENST00000323701 SMIM17P0DL12 118 aa13.32□□□□□ -0.28
USP39-201ENST00000323701 ANK2Q01484 3957 aa13.32□□□□□ -0.28
USP39-201ENST00000323701 TRAV9-2A0A087WT02 112 aa13.32□□□□□ -0.28
USP39-201ENST00000323701 LEPROTL1O95214 131 aa13.32□□□□□ -0.28
USP39-201ENST00000323701 PTTG1IPP53801 180 aa13.32□□□□□ -0.28
USP39-201ENST00000323701 ZNF747Q9BV97 191 aa13.32□□□□□ -0.28
USP39-201ENST00000323701 MRPS16Q9Y3D3 137 aaKnown RBP13.32□□□□□ -0.28
USP39-201ENST00000323701 LINC01546A6NGU7 62 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 F5H697 171 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 CCL25O15444 150 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 ZNF415Q09FC8 603 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 MRPL16Q9NX20 251 aaKnown RBP13.31□□□□□ -0.28
USP39-201ENST00000323701 IGHV3-73A0A0B4J1V6 119 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 PRSS47A8MTI9 375 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 GTSCR1Q86UQ5 136 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 Q8N8P6 123 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 RNASE8Q8TDE3 154 aaKnown RBP13.31□□□□□ -0.28
USP39-201ENST00000323701 DEFB104AQ8WTQ1 72 aa13.31□□□□□ -0.28
USP39-201ENST00000323701 SYS1-DBNDD2H3BUS1 97 aa13.3□□□□□ -0.28
USP39-201ENST00000323701 M0R2P5 195 aa13.3□□□□□ -0.28
USP39-201ENST00000323701 RBX1P62877 108 aa13.3□□□□□ -0.28
USP39-201ENST00000323701 MCRIP2Q9BUT9 160 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms