RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DSCR9P59020 149 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 MAPK1IP1LQ8NDC0 245 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 TRGV1A0A0A0MS02 117 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 I3L3M4 83 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 VWC2LB2RUY7 222 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 TMEM86BQ8N661 226 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 C11orf44Q8N8P7 122 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 SETD2Q9BYW2 2564 aaPredicted RBP11.87□□□□□ -0.51
SHH-201ENST00000297261 CRYGCP07315 174 aa11.87□□□□□ -0.51
SHH-201ENST00000297261 CTSGP08311 255 aa11.87□□□□□ -0.51
SHH-201ENST00000297261 SYNJ2BPP57105 145 aa11.87□□□□□ -0.51
SHH-201ENST00000297261 RPL39P62891 51 aaKnown RBP11.87□□□□□ -0.51
SHH-201ENST00000297261 RPL36AP83881 106 aaKnown RBP11.87□□□□□ -0.51
SHH-201ENST00000297261 RPL36ALQ969Q0 106 aaKnown RBP11.87□□□□□ -0.51
SHH-201ENST00000297261 A0A1W2PRX2 142 aa11.87□□□□□ -0.51
SHH-201ENST00000297261 TEX22C9J3V5 150 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 E9PLD3 99 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 C19orf84I3L1E1 186 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 ZNF80P51504 273 aaPredicted RBP11.86□□□□□ -0.51
SHH-201ENST00000297261 STHQ8IWL8 128 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 PRSS47A8MTI9 375 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 USMG5Q96IX5 58 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 HIVEP3Q5T1R4 2406 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 TRGV4A0A0C4DH28 118 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 A0A0J9YXV3 536 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 INS-IGF2F8WCM5 200 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 ZFP2Q6ZN57 461 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 MUSTN1Q8IVN3 82 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 PTPRBP23467 1997 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 FAM223BA6NKX1 122 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 IGLV1-47P01700 117 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 MSMBP08118 114 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 INAFM2P0DMQ5 153 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 LINC01620Q4KN68 170 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 FAM223AQ8IWN6 122 aa11.86□□□□□ -0.51
SHH-201ENST00000297261 CFAP161Q6P656 301 aa11.85□□□□□ -0.51
SHH-201ENST00000297261 Q6ZUT4 128 aa11.85□□□□□ -0.51
SHH-201ENST00000297261 LINC00574Q9H8X3 128 aa11.85□□□□□ -0.51
SHH-201ENST00000297261 UBE2E2Q96LR5 201 aa11.85□□□□□ -0.51
SHH-201ENST00000297261 C11orf86A6NJI1 115 aa11.85□□□□□ -0.51
SHH-201ENST00000297261 ZNF415Q09FC8 603 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 RBAKDNA6NC62 111 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 HOXB4P17483 251 aaPredicted RBP11.84□□□□□ -0.51
SHH-201ENST00000297261 CCDC168Q8NDH2 2452 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 DEFB131AP59861 70 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 DEFB1P60022 68 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 IGLV11-55A0A075B6I3 123 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 MAPKAPK5-AS1Q8N8E1 139 aa11.84□□□□□ -0.51
SHH-201ENST00000297261 BUB3O43684 328 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 BAALCQ8WXS3 180 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 IGHV1OR15-1A0A075B7D0 117 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 IGHV1-69DA0A0B4J2H0 117 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 IGHV1-69P01742 117 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 ZFP36P26651 326 aaKnown RBP11.83□□□□□ -0.52
SHH-201ENST00000297261 C6orf226Q5I0X4 101 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 CLUHP3Q96NS8 147 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 TM2D2Q9BX73 214 aa11.83□□□□□ -0.52
SHH-201ENST00000297261 IGHV4-61A0A0C4DH41 118 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 RNF223E7ERA6 249 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 PIP4P2Q8N4L2 257 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 NRGNQ92686 78 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 DSCAMO60469 2012 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 PFN2P35080 140 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 URB1-AS1Q96HZ7 61 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 LAMTOR3Q9UHA4 124 aa11.82□□□□□ -0.52
SHH-201ENST00000297261 CRIP1P50238 77 aa11.81□□□□□ -0.52
SHH-201ENST00000297261 PEMTQ9UBM1 199 aa11.81□□□□□ -0.52
SHH-201ENST00000297261 TCL1BO95988 128 aa11.81□□□□□ -0.52
SHH-201ENST00000297261 S100A7L2Q5SY68 101 aa11.81□□□□□ -0.52
SHH-201ENST00000297261 JPT2Q9H910 190 aa11.81□□□□□ -0.52
SHH-201ENST00000297261 TRAV12-1A0A0B4J245 112 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 INSL3P51460 131 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 CFAP54Q96N23 3096 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 MALP21145 153 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 MYO15AQ9UKN7 3530 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 FAM236AA0A1B0GUQ0 79 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 FAM236BA0A1B0GV22 79 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 WI2-2373I1.2A0A1W2PRP0 233 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 LINC01356Q8N9X3 169 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 TCTEX1D4Q5JR98 221 aa11.8□□□□□ -0.52
SHH-201ENST00000297261 TLN2Q9Y4G6 2542 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 NDUFA11Q86Y39 141 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 ABCA2Q9BZC7 2435 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 IGHV4-30-2A0A087WSY4 118 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 IGHV7-81A0A0B4J1V7 117 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 NDUFA4O00483 81 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 TRBV6-1A0A0K0K1D8 114 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 SOCS3O14543 225 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 IGHG4P01861 327 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 DAND5Q8N907 189 aa11.79□□□□□ -0.52
SHH-201ENST00000297261 TINCRA0A1B0GVN0 87 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 SUMO4Q6EEV6 95 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 HTN3P15516 51 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 MYCNOSP40205 109 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 LENEPQ9Y5L5 61 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 FRYLO94915 3013 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 ATP6V0E2Q8NHE4 81 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 ZNRF2Q8NHG8 242 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 TOMM6Q96B49 74 aa11.78□□□□□ -0.52
SHH-201ENST00000297261 XCL2Q9UBD3 114 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms