RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 NDUFS6O75380 124 aaKnown RBP13.3□□□□□ -0.28
SHANK1-201ENST00000293441 OBSL1O75147 1896 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 A6NDX4 124 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 C9orf153Q5TBE3 101 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 MED13LQ71F56 2210 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 TRBV7-3A0A075B6L6 115 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 A0A1W2PPM0 123 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 KIAA1549LQ6ZVL6 1849 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 PROP1O75360 226 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 MRPL36Q9P0J6 103 aaKnown RBP13.3□□□□□ -0.28
SHANK1-201ENST00000293441 ORMDL1Q9P0S3 153 aa13.3□□□□□ -0.28
SHANK1-201ENST00000293441 F8W1H4 67 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 C9orf47Q6ZRZ4 202 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 H3BMG7 143 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 C12orf74Q32Q52 190 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 UNQ9165/PRO28630Q6UXU0 137 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 DEFB125Q8N687 156 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 ETDBQ3ZM63 59 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 COX7B2Q8TF08 81 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 LTBP2Q14767 1821 aa13.29□□□□□ -0.28
SHANK1-201ENST00000293441 ZFHX2Q9C0A1 2572 aaPredicted RBP13.28□□□□□ -0.28
SHANK1-201ENST00000293441 TECTAO75443 2155 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 K7EP34 96 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 PCP2Q8IVA1 136 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 TMEM89A2RUT3 159 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 RS1O15537 224 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 COL4A3Q01955 1670 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 NCR3O14931 201 aa13.28□□□□□ -0.28
SHANK1-201ENST00000293441 LOXL1Q08397 574 aaPredicted RBP13.27□□□□□ -0.28
SHANK1-201ENST00000293441 C15orf53Q8NAA6 179 aa13.27□□□□□ -0.28
SHANK1-201ENST00000293441 A0A0J9YXV3 536 aa13.27□□□□□ -0.29
SHANK1-201ENST00000293441 BAALC-AS2P0C853 105 aa13.27□□□□□ -0.29
SHANK1-201ENST00000293441 RPL39P62891 51 aaKnown RBP13.27□□□□□ -0.29
SHANK1-201ENST00000293441 IGHV4-28A0A0C4DH34 117 aa13.27□□□□□ -0.29
SHANK1-201ENST00000293441 SIVA1O15304 175 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 UBE2AP49459 152 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 TMEM61Q8N0U2 210 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 CFC1BP0CG36 223 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 CFC1P0CG37 223 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 KLK12Q9UKR0 248 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 PRSS47A8MTI9 375 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 SND1-IT1Q9HBX3 110 aa13.26□□□□□ -0.29
SHANK1-201ENST00000293441 VSIG2Q96IQ7 327 aa13.25□□□□□ -0.29
SHANK1-201ENST00000293441 IGHV4-31P0DP07 118 aa13.25□□□□□ -0.29
SHANK1-201ENST00000293441 FAM167A-AS1Q96KT0 104 aa13.25□□□□□ -0.29
SHANK1-201ENST00000293441 TM2D2Q9BX73 214 aa13.25□□□□□ -0.29
SHANK1-201ENST00000293441 IGLV2-14P01704 120 aa13.25□□□□□ -0.29
SHANK1-201ENST00000293441 MUC6Q6W4X9 2439 aa13.25□□□□□ -0.29
SHANK1-201ENST00000293441 INAFM1C9JVW0 142 aa13.24□□□□□ -0.29
SHANK1-201ENST00000293441 NDUFA1O15239 70 aa13.24□□□□□ -0.29
SHANK1-201ENST00000293441 TRACP01848 142 aa13.24□□□□□ -0.29
SHANK1-201ENST00000293441 INSL3P51460 131 aa13.24□□□□□ -0.29
SHANK1-201ENST00000293441 MAP6D1Q9H9H5 199 aa13.24□□□□□ -0.29
SHANK1-201ENST00000293441 MDFICQ9P1T7 246 aa13.24□□□□□ -0.29
SHANK1-201ENST00000293441 NDUFA11Q86Y39 141 aa13.23□□□□□ -0.29
SHANK1-201ENST00000293441 DAND5Q8N907 189 aa13.23□□□□□ -0.29
SHANK1-201ENST00000293441 WFDC11Q8NEX6 87 aa13.23□□□□□ -0.29
SHANK1-201ENST00000293441 LYPD6BQ8NI32 183 aa13.23□□□□□ -0.29
SHANK1-201ENST00000293441 TNFRSF13BO14836 293 aaPredicted RBP13.23□□□□□ -0.29
SHANK1-201ENST00000293441 TMEM263Q8WUH6 116 aaKnown RBP13.23□□□□□ -0.29
SHANK1-201ENST00000293441 GTSF1Q8WW33 167 aa13.22□□□□□ -0.29
SHANK1-201ENST00000293441 FANCD2OSQ96PS1 177 aa13.22□□□□□ -0.29
SHANK1-201ENST00000293441 K7EP13 123 aa13.22□□□□□ -0.29
SHANK1-201ENST00000293441 LRRC75A-AS1Q8N1F1 130 aa13.22□□□□□ -0.29
SHANK1-201ENST00000293441 NTN5Q8WTR8 489 aaPredicted RBP13.22□□□□□ -0.29
SHANK1-201ENST00000293441 LMO4P61968 165 aa13.22□□□□□ -0.29
SHANK1-201ENST00000293441 MUSTN1Q8IVN3 82 aa13.22□□□□□ -0.29
SHANK1-201ENST00000293441 COL4A4P53420 1690 aaPredicted RBP13.22□□□□□ -0.29
SHANK1-201ENST00000293441 LINC00173Q6ZV60 143 aa13.21□□□□□ -0.29
SHANK1-201ENST00000293441 ANKRD29Q8N6D5 301 aa13.21□□□□□ -0.29
SHANK1-201ENST00000293441 FUSP35637 526 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHANK1-201ENST00000293441 LINC01548A6NM66 108 aa13.21□□□□□ -0.3
SHANK1-201ENST00000293441 C11orf45Q8TAV5 145 aa13.21□□□□□ -0.3
SHANK1-201ENST00000293441 CRYBA4P53673 196 aa13.2□□□□□ -0.3
SHANK1-201ENST00000293441 BAALCQ8WXS3 180 aa13.2□□□□□ -0.3
SHANK1-201ENST00000293441 A0A0J9YX75 114 aa13.19□□□□□ -0.3
SHANK1-201ENST00000293441 SPAG11BQ08648 103 aa13.19□□□□□ -0.3
SHANK1-201ENST00000293441 PLCE1Q9P212 2302 aa13.19□□□□□ -0.3
SHANK1-201ENST00000293441 ZNF843Q8N446 348 aa13.19□□□□□ -0.3
SHANK1-201ENST00000293441 Q6YL49 198 aa13.19□□□□□ -0.3
SHANK1-201ENST00000293441 IFITM1P13164 125 aa13.18□□□□□ -0.3
SHANK1-201ENST00000293441 C4orf48Q5BLP8 95 aa13.18□□□□□ -0.3
SHANK1-201ENST00000293441 CCDC140Q96MF4 163 aa13.18□□□□□ -0.3
SHANK1-201ENST00000293441 PRO0255Q9UI72 69 aa13.18□□□□□ -0.3
SHANK1-201ENST00000293441 TNRC6AQ8NDV7 1962 aaKnown RBP13.17□□□□□ -0.3
SHANK1-201ENST00000293441 LYPD6Q86Y78 171 aa13.17□□□□□ -0.3
SHANK1-201ENST00000293441 TOMM6Q96B49 74 aa13.17□□□□□ -0.3
SHANK1-201ENST00000293441 MED14OSP0DP75 135 aa13.17□□□□□ -0.3
SHANK1-201ENST00000293441 ODF3BA8MYP8 253 aa13.16□□□□□ -0.3
SHANK1-201ENST00000293441 CCL25O15444 150 aa13.16□□□□□ -0.3
SHANK1-201ENST00000293441 FREM1Q5H8C1 2179 aa13.16□□□□□ -0.3
SHANK1-201ENST00000293441 NPSP0C0P6 89 aa13.16□□□□□ -0.3
SHANK1-201ENST00000293441 FAM208BQ5VWN6 2430 aa13.16□□□□□ -0.3
SHANK1-201ENST00000293441 OPRPNQ99935 248 aaPredicted RBP13.16□□□□□ -0.3
SHANK1-201ENST00000293441 PLA2G2EQ9NZK7 142 aa13.16□□□□□ -0.3
SHANK1-201ENST00000293441 CEP192Q8TEP8 1941 aa13.15□□□□□ -0.3
SHANK1-201ENST00000293441 TNRC6BQ9UPQ9 1833 aaKnown RBP13.15□□□□□ -0.3
SHANK1-201ENST00000293441 A4D1N5 150 aa13.15□□□□□ -0.3
SHANK1-201ENST00000293441 IL17DQ8TAD2 202 aa13.15□□□□□ -0.3
SHANK1-201ENST00000293441 TRAV26-1A0A087WT03 109 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms