RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 RNASE1P07998 156 aaKnown RBP12.46□□□□□ -0.42
GPC1-201ENST00000264039 LINC00574Q9H8X3 128 aa12.46□□□□□ -0.42
GPC1-201ENST00000264039 TIMM21Q9BVV7 248 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 ATP6V0E1O15342 81 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 ZNF672Q499Z4 452 aaPredicted RBP12.45□□□□□ -0.42
GPC1-201ENST00000264039 GAGE2AQ6NT46 116 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 IGLV11-55A0A075B6I3 123 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 A0A0G2JNJ9 132 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 BUB3O43684 328 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 Q9UFV3 132 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 IGF2RP11717 2491 aa12.45□□□□□ -0.42
GPC1-201ENST00000264039 USP9YO00507 2555 aaPredicted RBP12.44□□□□□ -0.42
GPC1-201ENST00000264039 KNCNA6PVL3 124 aa12.44□□□□□ -0.42
GPC1-201ENST00000264039 HOXB4P17483 251 aaPredicted RBP12.44□□□□□ -0.42
GPC1-201ENST00000264039 TRAV12-2A0A075B6T6 113 aa12.44□□□□□ -0.42
GPC1-201ENST00000264039 PAX8Q06710 450 aa12.44□□□□□ -0.42
GPC1-201ENST00000264039 VMO1Q7Z5L0 202 aa12.44□□□□□ -0.42
GPC1-201ENST00000264039 TRAV41A0A0B4J266 112 aa12.44□□□□□ -0.42
GPC1-201ENST00000264039 UBE2D1P51668 147 aa12.43□□□□□ -0.42
GPC1-201ENST00000264039 Q6ZSV7 163 aa12.43□□□□□ -0.42
GPC1-201ENST00000264039 OTOGLQ3ZCN5 2332 aa12.42□□□□□ -0.42
GPC1-201ENST00000264039 B9A039 149 aa12.42□□□□□ -0.42
GPC1-201ENST00000264039 MRGPRG-AS1Q2M3A8 158 aa12.42□□□□□ -0.42
GPC1-201ENST00000264039 NDUFA12Q9UI09 145 aa12.42□□□□□ -0.42
GPC1-201ENST00000264039 M0QXV9 152 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 UBE2E1P51965 193 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 IGHV3-33P01772 117 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 TSPEAR-AS2P59090 65 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 PPDPFQ9H3Y8 114 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 IGHV3-30P01768 117 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 IGHV3-30-5P0DP03 117 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 UBE2D3P61077 147 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 UBE2D2P62837 147 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 CIRBPQ14011 172 aaKnown RBP12.41□□□□□ -0.42
GPC1-201ENST00000264039 SLC25A29Q8N8R3 303 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 KLK9Q9UKQ9 250 aa12.41□□□□□ -0.42
GPC1-201ENST00000264039 CEMP1Q6PRD7 247 aaPredicted RBP12.4□□□□□ -0.42
GPC1-201ENST00000264039 NUP37Q8NFH4 326 aa12.4□□□□□ -0.42
GPC1-201ENST00000264039 RNF5Q99942 180 aa12.4□□□□□ -0.42
GPC1-201ENST00000264039 FAM208BQ5VWN6 2430 aa12.4□□□□□ -0.42
GPC1-201ENST00000264039 TRIAP1O43715 76 aa12.4□□□□□ -0.42
GPC1-201ENST00000264039 CRYGBP07316 175 aa12.4□□□□□ -0.42
GPC1-201ENST00000264039 KHDC1LQ5JSQ8 128 aa12.4□□□□□ -0.42
GPC1-201ENST00000264039 PRRC2AP48634 2157 aaKnown RBP12.4□□□□□ -0.43
GPC1-201ENST00000264039 IGLV2-18A0A075B6J9 118 aa12.39□□□□□ -0.43
GPC1-201ENST00000264039 A8MZ25 164 aa12.39□□□□□ -0.43
GPC1-201ENST00000264039 PRR9Q5T870 116 aa12.39□□□□□ -0.43
GPC1-201ENST00000264039 TRAV13-1A0A0B4J241 112 aa12.39□□□□□ -0.43
GPC1-201ENST00000264039 ZNF580Q9UK33 172 aa12.39□□□□□ -0.43
GPC1-201ENST00000264039 TRBV10-2A0A0K0K1G8 114 aa12.39□□□□□ -0.43
GPC1-201ENST00000264039 IGHV7-4-1A0A0J9YVY3 117 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 OOSP1A8MZH6 123 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 KLK5Q9Y337 293 aaPredicted RBP12.38□□□□□ -0.43
GPC1-201ENST00000264039 TNFRSF18Q9Y5U5 241 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 IGHV3OR16-12A0A075B7B8 117 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 DNAL4O96015 105 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 CACNA1AO00555 2505 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 ACACBO00763 2458 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 ZNF22P17026 224 aaPredicted RBP12.38□□□□□ -0.43
GPC1-201ENST00000264039 SUMO4Q6EEV6 95 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 TOMM7Q9P0U1 55 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 ICOSQ9Y6W8 199 aa12.38□□□□□ -0.43
GPC1-201ENST00000264039 USP9XQ93008 2570 aaPredicted RBP12.38□□□□□ -0.43
GPC1-201ENST00000264039 HOXD3P31249 432 aaPredicted RBP12.37□□□□□ -0.43
GPC1-201ENST00000264039 LOC107984640A0A0U1RRK4 108 aa12.37□□□□□ -0.43
GPC1-201ENST00000264039 CDX4O14627 284 aaPredicted RBP12.37□□□□□ -0.43
GPC1-201ENST00000264039 RAI1Q7Z5J4 1906 aaPredicted RBP12.37□□□□□ -0.43
GPC1-201ENST00000264039 IGHV3-38A0A0C4DH36 116 aa12.37□□□□□ -0.43
GPC1-201ENST00000264039 ELANEP08246 267 aa12.37□□□□□ -0.43
GPC1-201ENST00000264039 C9orf139Q6ZV77 190 aa12.37□□□□□ -0.43
GPC1-201ENST00000264039 HIST1H4AP62805 103 aaKnown RBP12.36□□□□□ -0.43
GPC1-201ENST00000264039 OR13C6PQ8NH95 151 aa12.36□□□□□ -0.43
GPC1-201ENST00000264039 ZNRF2Q8NHG8 242 aa12.36□□□□□ -0.43
GPC1-201ENST00000264039 NCOR2Q9Y618 2525 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 IGHV7-81A0A0B4J1V7 117 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 NHLRC4P0CG21 123 aaPredicted RBP12.35□□□□□ -0.43
GPC1-201ENST00000264039 SYNJ2BPP57105 145 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 PRR30Q53SZ7 412 aaPredicted RBP12.35□□□□□ -0.43
GPC1-201ENST00000264039 OVOL3O00110 214 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 TMEM141Q96I45 108 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 LINC00694P0DN24 101 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 C8orf31Q8N9H6 132 aa12.35□□□□□ -0.43
GPC1-201ENST00000264039 IGHG4P01861 327 aa12.34□□□□□ -0.43
GPC1-201ENST00000264039 ATP5J2P56134 94 aa12.34□□□□□ -0.43
GPC1-201ENST00000264039 FN1P02751 2386 aaKnown RBP12.34□□□□□ -0.43
GPC1-201ENST00000264039 OVOL1O14753 267 aa12.34□□□□□ -0.43
GPC1-201ENST00000264039 KAAG1Q9UBP8 84 aa12.34□□□□□ -0.43
GPC1-201ENST00000264039 MSRB2Q9Y3D2 182 aa12.34□□□□□ -0.43
GPC1-201ENST00000264039 M0R1W7 72 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 THBDP07204 575 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 SPINK13Q1W4C9 94 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 RHPN1-AS1Q9BWJ2 59 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 CNFNQ9BYD5 112 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 BRD3OSQ6XYD6 125 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 DEFB123Q8N688 67 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 FAM110AQ9BQ89 295 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 IGKV3D-7A0A0C4DH55 119 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 LGALS9O00182 355 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 TMEM190Q8WZ59 177 aa12.33□□□□□ -0.44
GPC1-201ENST00000264039 CCL21O00585 134 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms