RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MAP1LC3AQ9H492 121 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 AP5S1Q9NUS5 200 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 COL6A5A8TX70 2615 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 TNFRSF6BO95407 300 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 C3orf79P0CE67 100 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 C3orf56Q8N813 242 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 NDUFAF3Q9BU61 184 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 C1QTNF4Q9BXJ3 329 aa13.23□□□□□ -0.29
VIM-201ENST00000224237 TRAV26-2A0A0B4J265 109 aa13.22□□□□□ -0.29
VIM-201ENST00000224237 LOC389332A0A1B0GUA5 103 aa13.22□□□□□ -0.29
VIM-201ENST00000224237 GAS8-AS1O95177 125 aa13.22□□□□□ -0.29
VIM-201ENST00000224237 RPL35AP18077 110 aaKnown RBP13.22□□□□□ -0.29
VIM-201ENST00000224237 IFI27P40305 119 aaPredicted RBP13.22□□□□□ -0.29
VIM-201ENST00000224237 C1orf158Q8N1D5 194 aa13.22□□□□□ -0.29
VIM-201ENST00000224237 Q8N976 141 aa13.22□□□□□ -0.29
VIM-201ENST00000224237 KIF25-AS1Q9Y6Z4 181 aa13.22□□□□□ -0.29
VIM-201ENST00000224237 MGPP08493 103 aa13.21□□□□□ -0.29
VIM-201ENST00000224237 ZNF876PQ49A33 203 aa13.21□□□□□ -0.29
VIM-201ENST00000224237 DEFB125Q8N687 156 aa13.21□□□□□ -0.29
VIM-201ENST00000224237 POM121L12Q8N7R1 296 aa13.21□□□□□ -0.29
VIM-201ENST00000224237 IGLL1P15814 213 aa13.21□□□□□ -0.3
VIM-201ENST00000224237 SHISA2Q6UWI4 295 aa13.21□□□□□ -0.3
VIM-201ENST00000224237 NRACQ8N912 160 aa13.21□□□□□ -0.3
VIM-201ENST00000224237 VAMP8Q9BV40 100 aa13.21□□□□□ -0.3
VIM-201ENST00000224237 IGHV1-24A0A0C4DH33 117 aa13.2□□□□□ -0.3
VIM-201ENST00000224237 WIPF1O43516 503 aa13.2□□□□□ -0.3
VIM-201ENST00000224237 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
VIM-201ENST00000224237 GATA1P15976 413 aaPredicted RBP13.2□□□□□ -0.3
VIM-201ENST00000224237 TMEM158Q8WZ71 300 aa13.2□□□□□ -0.3
VIM-201ENST00000224237 IGHV3OR16-12A0A075B7B8 117 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 M0R2P5 195 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 PRM2P04554 102 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 PIK3CD-AS1Q5SR53 167 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 C12orf54Q6X4T0 127 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 C11orf72Q8NBR9 251 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 JPT2Q9H910 190 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 GOLT1BQ9Y3E0 138 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 BTF3P20290 206 aaKnown RBP13.19□□□□□ -0.3
VIM-201ENST00000224237 LINC00315P59091 139 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 PTH2Q96A98 100 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 SPXQ9BT56 116 aa13.19□□□□□ -0.3
VIM-201ENST00000224237 NXT2Q9NPJ8 142 aaKnown RBP13.19□□□□□ -0.3
VIM-201ENST00000224237 A0A087WWL8 130 aa13.18□□□□□ -0.3
VIM-201ENST00000224237 PRSS47A8MTI9 375 aa13.18□□□□□ -0.3
VIM-201ENST00000224237 PPP1R17O96001 155 aa13.18□□□□□ -0.3
VIM-201ENST00000224237 PMCHL1Q16048 86 aa13.18□□□□□ -0.3
VIM-201ENST00000224237 LBHQ53QV2 105 aaPredicted RBP13.17□□□□□ -0.3
VIM-201ENST00000224237 FAM74A4Q5TZK3 123 aa13.16□□□□□ -0.3
VIM-201ENST00000224237 RASL10AQ92737 203 aa13.16□□□□□ -0.3
VIM-201ENST00000224237 CRYGDP07320 174 aa13.16□□□□□ -0.3
VIM-201ENST00000224237 CSNK1G2-AS1Q8NCQ2 148 aa13.16□□□□□ -0.3
VIM-201ENST00000224237 TMEM263Q8WUH6 116 aaKnown RBP13.16□□□□□ -0.3
VIM-201ENST00000224237 PAM16Q9Y3D7 125 aa13.16□□□□□ -0.3
VIM-201ENST00000224237 LINC01546A6NGU7 62 aa13.15□□□□□ -0.3
VIM-201ENST00000224237 LEPROTL1O95214 131 aa13.15□□□□□ -0.3
VIM-201ENST00000224237 AZU1P20160 251 aa13.15□□□□□ -0.3
VIM-201ENST00000224237 RNASE8Q8TDE3 154 aaKnown RBP13.15□□□□□ -0.3
VIM-201ENST00000224237 C20orf78Q9BR46 151 aa13.15□□□□□ -0.3
VIM-201ENST00000224237 TMEM70Q9BUB7 260 aa13.15□□□□□ -0.3
VIM-201ENST00000224237 A8MWV9 139 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 F5H697 171 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 Q8N8P6 123 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 MIEN1Q9BRT3 115 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 CSTL1Q9H114 145 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 IGLV2-18A0A075B6J9 118 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 SUMO2P61956 95 aaKnown RBP13.14□□□□□ -0.31
VIM-201ENST00000224237 ZNF56Q15929 161 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 SUMO4Q6EEV6 95 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 IL17DQ8TAD2 202 aa13.14□□□□□ -0.31
VIM-201ENST00000224237 RPL39LQ96EH5 51 aaKnown RBP13.14□□□□□ -0.31
VIM-201ENST00000224237 ZNF705AQ6ZN79 300 aaPredicted RBP13.13□□□□□ -0.31
VIM-201ENST00000224237 PKD1L1Q8TDX9 2849 aa13.13□□□□□ -0.31
VIM-201ENST00000224237 SMIM2Q9BVW6 85 aa13.12□□□□□ -0.31
VIM-201ENST00000224237 HSPB8Q9UJY1 196 aa13.12□□□□□ -0.31
VIM-201ENST00000224237 C16orf74Q96GX8 76 aa13.12□□□□□ -0.31
VIM-201ENST00000224237 A0A096LNJ9 63 aa13.11□□□□□ -0.31
VIM-201ENST00000224237 HBDP02042 147 aa13.11□□□□□ -0.31
VIM-201ENST00000224237 C20orf202A1L168 122 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 SPATA45Q537H7 98 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 LURAP1LQ8IV03 231 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 MRPL16Q9NX20 251 aaKnown RBP13.1□□□□□ -0.31
VIM-201ENST00000224237 SYS1-DBNDD2H3BUS1 97 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 RRN3P1Q2M238 152 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 OXLD1Q5BKU9 147 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 MRPL52Q86TS9 123 aaKnown RBP13.1□□□□□ -0.31
VIM-201ENST00000224237 MAP1LC3CQ9BXW4 147 aa13.1□□□□□ -0.31
VIM-201ENST00000224237 M0QY20 66 aa13.09□□□□□ -0.31
VIM-201ENST00000224237 CFAP126Q5VTH2 177 aa13.09□□□□□ -0.31
VIM-201ENST00000224237 C2orf88Q9BSF0 95 aa13.09□□□□□ -0.31
VIM-201ENST00000224237 K7EMI3 77 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 RHODO00212 210 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 RPL32P62910 135 aaKnown RBP13.08□□□□□ -0.32
VIM-201ENST00000224237 UFSP1Q6NVU6 142 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 PET117Q6UWS5 81 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 KIR2DL5BQ8NHK3 375 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 EDA2RQ9HAV5 297 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 ST20Q9HBF5 79 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 TRAV9-2A0A087WT02 112 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 TRBV6-5A0A0K0K1A5 114 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 H7C1H1 209 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms