RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 CTRLP40313 264 aa13.05□□□□□ -0.32
SHKBP1-224ENST00000600718 BAGE3Q86Y29 109 aa13.05□□□□□ -0.32
SHKBP1-224ENST00000600718 SAMD10Q9BYL1 202 aa13.05□□□□□ -0.32
SHKBP1-224ENST00000600718 ZNF324O75467 553 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-224ENST00000600718 TRAV12-3A0A0B4J271 114 aa13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 C21orf62-AS1Q17RA5 79 aa13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 ANXA2RQ3ZCQ2 193 aa13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 MCRIP2Q9BUT9 160 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 STHQ8IWL8 128 aa13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 WFDC9Q8NEX5 89 aa13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 KCNS1Q96KK3 526 aa13.03□□□□□ -0.32
SHKBP1-224ENST00000600718 TRAV12-2A0A075B6T6 113 aa13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 RBMY1BA6NDE4 496 aaKnown RBP13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 RBMY1EA6NEQ0 496 aaKnown RBP13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 APCSP02743 223 aa13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 RBMY1DP0C7P1 496 aaKnown RBP13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 MUC21Q5SSG8 566 aa13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 FAM159AQ6UWV7 190 aa13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 C3orf56Q8N813 242 aa13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 SSBP4Q9BWG4 385 aaPredicted RBP13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 CNFNQ9BYD5 112 aa13.02□□□□□ -0.32
SHKBP1-224ENST00000600718 OR10J3Q5JRS4 329 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 GATD1Q8NB37 220 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 TMEM158Q8WZ71 300 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 WNK1Q9H4A3 2382 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 CD7P09564 240 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 OR5AL1P0C617 328 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 ASIPP42127 132 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 SHISA2Q6UWI4 295 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 C12orf54Q6X4T0 127 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 Q8N976 141 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 SPATA3Q8NHX4 192 aa13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 NIPBLQ6KC79 2804 aaeCLIP13.01□□□□□ -0.33
SHKBP1-224ENST00000600718 SNAI2O43623 268 aa13□□□□□ -0.33
SHKBP1-224ENST00000600718 FXYD7P58549 80 aa13□□□□□ -0.33
SHKBP1-224ENST00000600718 C19orf73Q9NVV2 129 aa13□□□□□ -0.33
SHKBP1-224ENST00000600718 MED14OSP0DP75 135 aa13□□□□□ -0.33
SHKBP1-224ENST00000600718 BATFQ16520 125 aa13□□□□□ -0.33
SHKBP1-224ENST00000600718 TRPT1Q86TN4 253 aaKnown RBP13□□□□□ -0.33
SHKBP1-224ENST00000600718 UQCR10Q9UDW1 63 aa13□□□□□ -0.33
SHKBP1-224ENST00000600718 CRXO43186 299 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 GNRH2O43555 120 aa12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 NTF3P20783 257 aa12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 S100A4P26447 101 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 SLAQ13239 276 aa12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 TWIST1Q15672 202 aa12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 DMRTA1Q5VZB9 504 aa12.99□□□□□ -0.33
SHKBP1-224ENST00000600718 MUC21A0A0G2JKD1 596 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 MUC21A0A140T8X8 626 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 CACNG7P62955 275 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 ZNF493Q6ZR52 646 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 IGHV1OR15-1A0A075B7D0 117 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 KRTDAPP60985 99 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 SPATA45Q537H7 98 aa12.98□□□□□ -0.33
SHKBP1-224ENST00000600718 JMJD1CQ15652 2540 aa12.97□□□□□ -0.33
SHKBP1-224ENST00000600718 IGHV4-4A0A075B6R2 117 aa12.97□□□□□ -0.33
SHKBP1-224ENST00000600718 H3BVH4 76 aa12.97□□□□□ -0.33
SHKBP1-224ENST00000600718 KIAA1644Q3SXP7 199 aa12.97□□□□□ -0.33
SHKBP1-224ENST00000600718 SORL1Q92673 2214 aa12.96□□□□□ -0.33
SHKBP1-224ENST00000600718 IGLC3P0DOY3 106 aa12.96□□□□□ -0.34
SHKBP1-224ENST00000600718 AMTP48728 403 aa12.96□□□□□ -0.34
SHKBP1-224ENST00000600718 OR10AG1Q8NH19 301 aa12.96□□□□□ -0.34
SHKBP1-224ENST00000600718 ORAOV1Q8WV07 137 aa12.96□□□□□ -0.34
SHKBP1-224ENST00000600718 SCRT2Q9NQ03 307 aa12.96□□□□□ -0.34
SHKBP1-224ENST00000600718 AGRNO00468 2067 aa12.96□□□□□ -0.34
SHKBP1-224ENST00000600718 RNASE3P12724 160 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-224ENST00000600718 SPANXN1Q5VSR9 72 aa12.95□□□□□ -0.34
SHKBP1-224ENST00000600718 GTSCR1Q86UQ5 136 aa12.95□□□□□ -0.34
SHKBP1-224ENST00000600718 TIMM8BQ9Y5J9 83 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-224ENST00000600718 WIPF1O43516 503 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 INSP01308 110 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 RBMY1A1P0DJD3 496 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 RBMY1CP0DJD4 496 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 RBMY1FQ15415 496 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 TMEM191AQ9H0A3 160 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 MSRB1Q9NZV6 116 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 LOC102724200A0A096LPH7 203 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 IGLL1P15814 213 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 HNRNPA3P51991 378 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 LAMTOR2Q9Y2Q5 125 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 PHLDA3Q9Y5J5 127 aa12.94□□□□□ -0.34
SHKBP1-224ENST00000600718 SRIP30626 198 aa12.93□□□□□ -0.34
SHKBP1-224ENST00000600718 FAM104BQ5XKR9 115 aa12.93□□□□□ -0.34
SHKBP1-224ENST00000600718 Q8N1Y9 231 aa12.93□□□□□ -0.34
SHKBP1-224ENST00000600718 LINC00467Q9BRT7 94 aa12.93□□□□□ -0.34
SHKBP1-224ENST00000600718 WFDC10AQ9H1F0 79 aa12.93□□□□□ -0.34
SHKBP1-224ENST00000600718 TRGV11A0A075B6L2 103 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 IGHV3-16A0A0C4DH30 117 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 COTL1Q14019 142 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 SMIM15Q7Z3B0 74 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 STPG4Q8N801 248 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 ALKBH7Q9BT30 221 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 TEP1Q99973 2627 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 C20orf202A1L168 122 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 PRR31Q5SQ13 230 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 Q6ZN92 141 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 XCL2Q9UBD3 114 aa12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 MRPS16Q9Y3D3 137 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-224ENST00000600718 CBY3A6NI87 242 aa12.91□□□□□ -0.34
SHKBP1-224ENST00000600718 C3orf79P0CE67 100 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms