RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 JPT2Q9H910 190 aa5.67□□□□□ -1.5
SHKBP1-220ENST00000599716 OTORQ9NRC9 128 aa5.67□□□□□ -1.5
SHKBP1-220ENST00000599716 LENEPQ9Y5L5 61 aa5.67□□□□□ -1.5
SHKBP1-220ENST00000599716 FAM240BA0A1B0GVZ2 78 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 RBFOX3A6NFN3 312 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 OXTP01178 125 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 C1QBP02746 253 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 HNRNPA3P51991 378 aaKnown RBP5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 RAB2AP61019 212 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 KHDC3LQ587J8 217 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 LCE3BQ5TA77 95 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 SH2D6Q7Z4S9 175 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 C14orf178Q8N769 122 aaPredicted RBP5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 CIRBP-AS1Q8TBR5 109 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 ATP5SQ99766 215 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 WFDC1Q9HC57 220 aa5.66□□□□□ -1.5
SHKBP1-220ENST00000599716 TRBV6-4A0A1B0GX49 114 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 C17orf112F2Z3M2 114 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 GCGP01275 180 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 RNASE3P12724 160 aaKnown RBP5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 TMED6Q8WW62 240 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 C9orf85Q96MD7 179 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 TM2D2Q9BX73 214 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 KCNIP2Q9NS61 270 aa5.65□□□□□ -1.5
SHKBP1-220ENST00000599716 IGKV2D-24A0A075B6R9 120 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 LINC00694P0DN24 101 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 H2BFSP57053 126 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 TAS2R45P59539 299 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 LAGE3Q14657 143 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 KCNS1Q96KK3 526 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 KRTAP4-12Q9BQ66 201 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 CHAC1Q9BUX1 264 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 PARLQ9H300 379 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 KLK12Q9UKR0 248 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 HSPB11Q9Y547 144 aa5.64□□□□□ -1.51
SHKBP1-220ENST00000599716 TRAV8-3A0A0A6YYJ7 113 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 TRAV34A0A0B4J273 112 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 ARL14EPLP0DKL9 152 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 LGALSLQ3ZCW2 172 aaPredicted RBP5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 PRNTQ86SH4 94 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 SCGB1C1Q8TD33 95 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 PPP1R1CQ8WVI7 109 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 UBE2WQ96B02 151 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 LINC00479Q96M42 142 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 PSG8Q9UQ74 426 aa5.63□□□□□ -1.51
SHKBP1-220ENST00000599716 IGKV3D-20A0A0C4DH25 116 aa5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 A0A1W2PPV4 95 aa5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 GGTLC3B5MD39 225 aa5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 IGLV2-11P01706 119 aa5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 TCRAP04437 139 aa5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 MGST1P10620 155 aaKnown RBP5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 FAM74A1Q5RGS3 127 aa5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 DAZAP1Q96EP5 407 aaKnown RBP5.62□□□□□ -1.51
SHKBP1-220ENST00000599716 A0A087WWL8 130 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 GRIFINA4D1Z8 144 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 RNF222A6NCQ9 220 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 H3BVH4 76 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 PANO1I0J062 215 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 TAAR5O14804 337 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 MPC2O95563 127 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 RPL12P30050 165 aaKnown RBP5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 ACOT6Q3I5F7 207 aaPredicted RBP5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 FAM74A4Q5TZK3 123 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 NIT1Q86X76 327 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 CYB561D1Q8N8Q1 229 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 OR10G9Q8NGN4 311 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 OR10G7Q8NGN6 311 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 ENKURQ8TC29 256 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 NDFIP1Q9BT67 221 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 BATF3Q9NR55 127 aa5.61□□□□□ -1.51
SHKBP1-220ENST00000599716 M0R036 132 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 S100A4P26447 101 aaKnown RBP5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 RPL37AP61513 92 aaKnown RBP5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 SUMO1P63165 101 aaKnown RBP5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 FLI1Q01543 452 aaPredicted RBP5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 IFITM3Q01628 133 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 ASAH1Q13510 395 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 SMUG1Q53HV7 270 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 UFSP1Q6NVU6 142 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 MZT2BQ6NZ67 158 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 PQLC2Q6ZP29 291 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 Q8N976 141 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 HSD17B11Q8NBQ5 300 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 CCDC32Q9BV29 185 aa5.6□□□□□ -1.51
SHKBP1-220ENST00000599716 TMSB15BA0A087X1C1 80 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 INMT-MINDY4F8WBC2 141 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 GCHFRP30047 84 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 CDC34P49427 236 aaPredicted RBP5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 DEFA3P59666 94 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 ODF1Q14990 250 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 C5orf17Q8NAS9 161 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 SH3BGRL3Q9H299 93 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 EPDR1Q9UM22 224 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 URGCP-MRPS24S4R325 110 aa5.59□□□□□ -1.51
SHKBP1-220ENST00000599716 A0A087WX48 190 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 A8MWV9 139 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 SSNA1O43805 119 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 CIDEAO60543 219 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 GAS8-AS1O95177 125 aa5.58□□□□□ -1.52
SHKBP1-220ENST00000599716 STAG3L2P0CL84 134 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms