RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SMIM9A6NGZ8 99 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 K7EIL1 84 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 RNASE3P12724 160 aaKnown RBP11.2□□□□□ -0.62
UPF1-206ENST00000598471 HBBP68871 147 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 DEFA6Q01524 100 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 ZFP82Q8N141 532 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.2□□□□□ -0.62
UPF1-206ENST00000598471 SYT8Q8NBV8 401 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 C9orf85Q96MD7 179 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 SPXQ9BT56 116 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 CNFNQ9BYD5 112 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 SCRT2Q9NQ03 307 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 MDFICQ9P1T7 246 aa11.2□□□□□ -0.62
UPF1-206ENST00000598471 COLCA2A8K830 154 aa11.19□□□□□ -0.62
UPF1-206ENST00000598471 SNURFLB1AK76 121 aa11.19□□□□□ -0.62
UPF1-206ENST00000598471 OR10AG1Q8NH19 301 aa11.19□□□□□ -0.62
UPF1-206ENST00000598471 RNF183Q96D59 192 aa11.19□□□□□ -0.62
UPF1-206ENST00000598471 M0R381 172 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 RAB5AP20339 215 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 TWIST1Q15672 202 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 DEFB121Q5J5C9 76 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 SMIM15Q7Z3B0 74 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 RNASE8Q8TDE3 154 aaKnown RBP11.18□□□□□ -0.62
UPF1-206ENST00000598471 GSN-AS1Q9NRJ2 163 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 TP53TG1Q9Y2A0 90 aa11.18□□□□□ -0.62
UPF1-206ENST00000598471 IGHV4-4A0A075B6R2 117 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 MUC21A0A0G2JKD1 596 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 MUC21A0A140T8X8 626 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 A0A1B0GXF2 115 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 M0R2P5 195 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 SPRY2O43597 315 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 MT-ND6P03923 174 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 AZU1P20160 251 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 NTF3P20783 257 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 CAMPP49913 170 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 RAB4BP61018 213 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 SSTP61278 116 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 C11orf72Q8NBR9 251 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 OR11H2Q8NH07 326 aa11.17□□□□□ -0.62
UPF1-206ENST00000598471 NXPH4O95158 308 aa11.16□□□□□ -0.62
UPF1-206ENST00000598471 PRM2P04554 102 aa11.16□□□□□ -0.62
UPF1-206ENST00000598471 TRGC1P0CF51 173 aa11.16□□□□□ -0.62
UPF1-206ENST00000598471 GNB1LQ9BYB4 327 aa11.16□□□□□ -0.62
UPF1-206ENST00000598471 DNAH3Q8TD57 4116 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 HLA-DQA1P01909 254 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 MIFP14174 115 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 RPS10P46783 165 aaKnown RBP11.15□□□□□ -0.62
UPF1-206ENST00000598471 PTH2Q96A98 100 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 AP1S3Q96PC3 154 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 X6R8D5 127 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 FBN3Q75N90 2809 aa11.15□□□□□ -0.62
UPF1-206ENST00000598471 NOTCH1P46531 2555 aa11.14□□□□□ -0.63
UPF1-206ENST00000598471 DAZ2Q13117 558 aaKnown RBP11.14□□□□□ -0.63
UPF1-206ENST00000598471 ZNF876PQ49A33 203 aa11.14□□□□□ -0.63
UPF1-206ENST00000598471 PIK3CD-AS1Q5SR53 167 aa11.14□□□□□ -0.63
UPF1-206ENST00000598471 IL17DQ8TAD2 202 aa11.14□□□□□ -0.63
UPF1-206ENST00000598471 MRAPQ8TCY5 172 aa11.14□□□□□ -0.63
UPF1-206ENST00000598471 NDUFAF3Q9BU61 184 aa11.14□□□□□ -0.63
UPF1-206ENST00000598471 NBEAL1Q6ZS30 2694 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 DMRTA1Q5VZB9 504 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 TMEM136Q6ZRR5 245 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 GATD1Q8NB37 220 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 FRZBQ92765 325 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 TMEM191AQ9H0A3 160 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 TRAPPC1Q9Y5R8 145 aa11.13□□□□□ -0.63
UPF1-206ENST00000598471 SMIM17P0DL12 118 aa11.12□□□□□ -0.63
UPF1-206ENST00000598471 LGALS9BQ3B8N2 356 aa11.12□□□□□ -0.63
UPF1-206ENST00000598471 SPATA25Q9BR10 227 aa11.12□□□□□ -0.63
UPF1-206ENST00000598471 OVOL2Q9BRP0 275 aa11.12□□□□□ -0.63
UPF1-206ENST00000598471 NOP10Q9NPE3 64 aaKnown RBP11.12□□□□□ -0.63
UPF1-206ENST00000598471 MSRB1Q9NZV6 116 aa11.12□□□□□ -0.63
UPF1-206ENST00000598471 TRGV1A0A0A0MS02 117 aa11.11□□□□□ -0.63
UPF1-206ENST00000598471 IGHV4-28A0A0C4DH34 117 aa11.11□□□□□ -0.63
UPF1-206ENST00000598471 A8MWV9 139 aa11.11□□□□□ -0.63
UPF1-206ENST00000598471 MRPL18Q9H0U6 180 aaKnown RBP11.11□□□□□ -0.63
UPF1-206ENST00000598471 DPH3P1Q9H4G8 78 aa11.11□□□□□ -0.63
UPF1-206ENST00000598471 MRPL16Q9NX20 251 aaKnown RBP11.11□□□□□ -0.63
UPF1-206ENST00000598471 PLAC8L1A1L4L8 177 aa11.1□□□□□ -0.63
UPF1-206ENST00000598471 APCSP02743 223 aa11.1□□□□□ -0.63
UPF1-206ENST00000598471 EMP1P54849 157 aa11.1□□□□□ -0.63
UPF1-206ENST00000598471 FABP9Q0Z7S8 132 aa11.1□□□□□ -0.63
UPF1-206ENST00000598471 SBSPONQ8IVN8 264 aa11.1□□□□□ -0.63
UPF1-206ENST00000598471 RASL10AQ92737 203 aa11.1□□□□□ -0.63
UPF1-206ENST00000598471 LYRM9A8MSI8 78 aa11.09□□□□□ -0.63
UPF1-206ENST00000598471 Q8NAQ8 132 aa11.09□□□□□ -0.63
UPF1-206ENST00000598471 RETNQ9HD89 108 aa11.09□□□□□ -0.63
UPF1-206ENST00000598471 TEX48A0A1B0GUV7 120 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 RHODO00212 210 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 TRGC2P03986 189 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 EVI2AP22794 236 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 FAM104BQ5XKR9 115 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 C14orf178Q8N769 122 aaPredicted RBP11.08□□□□□ -0.64
UPF1-206ENST00000598471 TM2D3Q9BRN9 247 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 ZMAT4Q9H898 229 aa11.08□□□□□ -0.64
UPF1-206ENST00000598471 C1orf196B1AJZ1 125 aa11.07□□□□□ -0.64
UPF1-206ENST00000598471 MGPP08493 103 aa11.07□□□□□ -0.64
UPF1-206ENST00000598471 Q6ZTI0 123 aa11.07□□□□□ -0.64
UPF1-206ENST00000598471 AMN1Q8IY45 258 aa11.07□□□□□ -0.64
UPF1-206ENST00000598471 TRGV2A0A075B6R0 118 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 GAGE12BA1L429 117 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms