RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 EBLN2Q6P2I7 272 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 SNHG12Q9BXW3 62 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 AGRNO00468 2067 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 CKS2P33552 79 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 TDRG1Q3Y452 100 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 TMEM61Q8N0U2 210 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 CITED2Q99967 270 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 C2CD3Q4AC94 2353 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 IGHV4-4A0A075B6R2 117 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 LOC389332A0A1B0GUA5 103 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 NPYP01303 97 aa12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 IFI27P40305 119 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-216ENST00000598201 SPANXN1Q5VSR9 72 aa12.67□□□□□ -0.38
SHKBP1-216ENST00000598201 SIGLEC8Q9NYZ4 499 aa12.67□□□□□ -0.38
SHKBP1-216ENST00000598201 TRAV12-3A0A0B4J271 114 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 ASIPP42127 132 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 TEX43Q6ZNM6 134 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 LINC00173Q6ZV60 143 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 PRSS3P2Q8NHM4 247 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 ODF3Q96PU9 254 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 TRAV12-2A0A075B6T6 113 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 RNASE3P12724 160 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 CACNG7P62955 275 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 FHL3Q13643 280 aa12.66□□□□□ -0.38
SHKBP1-216ENST00000598201 GATA1P15976 413 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-216ENST00000598201 S100A4P26447 101 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-216ENST00000598201 LEPP41159 167 aa12.65□□□□□ -0.38
SHKBP1-216ENST00000598201 FOXI2Q6ZQN5 318 aa12.65□□□□□ -0.38
SHKBP1-216ENST00000598201 AP5S1Q9NUS5 200 aa12.65□□□□□ -0.38
SHKBP1-216ENST00000598201 TMEM238LA0A1B0GVL6 79 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 C7orf71A4D174 169 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 CCL24O00175 119 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 RIPPLY3P57055 190 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 DEFB114Q30KQ6 69 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 FA2HQ7L5A8 372 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 SCRT2Q9NQ03 307 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 ATRQ13535 2644 aa12.65□□□□□ -0.39
SHKBP1-216ENST00000598201 KNCNA6PVL3 124 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 M0R381 172 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 NPSP0C0P6 89 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 DEFB131AP59861 70 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 SPINK13Q1W4C9 94 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 KRTAP24-1Q3LI83 254 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 AMTNQ6UX39 209 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 DYNLRB2Q8TF09 96 aa12.64□□□□□ -0.39
SHKBP1-216ENST00000598201 CD300EQ496F6 205 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 SPATA12Q7Z6I5 190 aa12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 CHTOPQ9Y3Y2 248 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 TSSC4Q9Y5U2 329 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 DUSP14O95147 198 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 PPBPP02775 128 aa12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 FAM159AQ6UWV7 190 aa12.63□□□□□ -0.39
SHKBP1-216ENST00000598201 WNK1Q9H4A3 2382 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 TRAV26-2A0A0B4J265 109 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 NDUFA7O95182 113 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 LEPROTL1O95214 131 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 MED14OSP0DP75 135 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 CDKN1BP46527 198 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 PHLDA3Q9Y5J5 127 aa12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 FBN1P35555 2871 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-216ENST00000598201 A0A096LNJ9 63 aa12.61□□□□□ -0.39
SHKBP1-216ENST00000598201 TRAV2A0A0B4J234 112 aa12.61□□□□□ -0.39
SHKBP1-216ENST00000598201 TNFRSF6BO95407 300 aa12.61□□□□□ -0.39
SHKBP1-216ENST00000598201 SMIM15Q7Z3B0 74 aa12.61□□□□□ -0.39
SHKBP1-216ENST00000598201 TMEM158Q8WZ71 300 aa12.61□□□□□ -0.39
SHKBP1-216ENST00000598201 KIR2DL5BA0A0G2JN68 375 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 KIR2DL5BA0A0G2JPC4 375 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 FXYD7P58549 80 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 KIR2DL5AQ8N109 375 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 PAM16Q9Y3D7 125 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 CD7P09564 240 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 RBX1P62877 108 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 TMEM70Q9BUB7 260 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 MAP6D1Q9H9H5 199 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 MUC4Q99102 2169 aa12.6□□□□□ -0.39
SHKBP1-216ENST00000598201 RBMY1BA6NDE4 496 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 RBMY1EA6NEQ0 496 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 H3BMM0 161 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 RBMY1DP0C7P1 496 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 HLA-DRB4P13762 266 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 TSPOP30536 169 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 PROK1P58294 105 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 ATOH7Q8N100 152 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 VAMP8Q9BV40 100 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 MAP1LC3AQ9H492 121 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 ZNF256Q9Y2P7 627 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 LAMTOR2Q9Y2Q5 125 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 HLA-DRB4X5D2U9 266 aa12.59□□□□□ -0.39
SHKBP1-216ENST00000598201 C14orf178Q8N769 122 aaPredicted RBP12.58□□□□□ -0.39
SHKBP1-216ENST00000598201 NRACQ8N912 160 aa12.58□□□□□ -0.39
SHKBP1-216ENST00000598201 OR2K2Q8NGT1 345 aa12.58□□□□□ -0.39
SHKBP1-216ENST00000598201 ADARB2-AS1A8MUL3 147 aa12.58□□□□□ -0.4
SHKBP1-216ENST00000598201 SYS1-DBNDD2H3BUS1 97 aa12.58□□□□□ -0.4
SHKBP1-216ENST00000598201 NXPH4O95158 308 aa12.58□□□□□ -0.4
SHKBP1-216ENST00000598201 RBMY1A1P0DJD3 496 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-216ENST00000598201 RBMY1CP0DJD4 496 aa12.58□□□□□ -0.4
SHKBP1-216ENST00000598201 RBMY1FQ15415 496 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-216ENST00000598201 A8MTW9 85 aa12.57□□□□□ -0.4
SHKBP1-216ENST00000598201 CRXO43186 299 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms