RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR10AG1Q8NH19 301 aa10.6□□□□□ -0.71
VRK3-212ENST00000596814 RNASE8Q8TDE3 154 aaKnown RBP10.6□□□□□ -0.71
VRK3-212ENST00000596814 CNFNQ9BYD5 112 aa10.6□□□□□ -0.71
VRK3-212ENST00000596814 PHLDA3Q9Y5J5 127 aa10.6□□□□□ -0.71
VRK3-212ENST00000596814 COLCA2A8K830 154 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 RIGQ13278 110 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.59□□□□□ -0.71
VRK3-212ENST00000596814 C11orf72Q8NBR9 251 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 RNF183Q96D59 192 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 C16orf74Q96GX8 76 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 FAM210BQ96KR6 192 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 GSN-AS1Q9NRJ2 163 aa10.59□□□□□ -0.71
VRK3-212ENST00000596814 SPRY2O43597 315 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 SSTP61278 116 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 CACNG7P62955 275 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 DEFB121Q5J5C9 76 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 SPANXN1Q5VSR9 72 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 X6R8D5 127 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 MUC4Q99102 2169 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 A0A1B0GXF2 115 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 SMIM9A6NGZ8 99 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 M0R381 172 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 HBBP68871 147 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 WDR73Q6P4I2 378 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 ZNF493Q6ZR52 646 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 OR11H2Q8NH07 326 aa10.58□□□□□ -0.72
VRK3-212ENST00000596814 TWIST1Q15672 202 aa10.57□□□□□ -0.72
VRK3-212ENST00000596814 ZFP82Q8N141 532 aa10.57□□□□□ -0.72
VRK3-212ENST00000596814 TP53TG1Q9Y2A0 90 aa10.57□□□□□ -0.72
VRK3-212ENST00000596814 IGHV4-4A0A075B6R2 117 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 A0A1B0GW15 77 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 SNURFLB1AK76 121 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 NXPH4O95158 308 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 NTF3P20783 257 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 CAMPP49913 170 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 RASL11AQ6T310 242 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 SYT8Q8NBV8 401 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 IL17DQ8TAD2 202 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 SPXQ9BT56 116 aa10.56□□□□□ -0.72
VRK3-212ENST00000596814 S100A8P05109 93 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 MRAPQ8TCY5 172 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 PLAC8L1A1L4L8 177 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 M0R2P5 195 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 RAB5AP20339 215 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 COX19Q49B96 90 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 DMRTA1Q5VZB9 504 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 OVOL2Q9BRP0 275 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 RETNQ9HD89 108 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 MSRB1Q9NZV6 116 aa10.55□□□□□ -0.72
VRK3-212ENST00000596814 MIFP14174 115 aa10.54□□□□□ -0.72
VRK3-212ENST00000596814 RAB4BP61018 213 aa10.54□□□□□ -0.72
VRK3-212ENST00000596814 SBSPONQ8IVN8 264 aa10.54□□□□□ -0.72
VRK3-212ENST00000596814 TRGC1P0CF51 173 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 DAZ2Q13117 558 aaKnown RBP10.53□□□□□ -0.72
VRK3-212ENST00000596814 ZNF876PQ49A33 203 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 TMEM136Q6ZRR5 245 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 AP1S3Q96PC3 154 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 GNB1LQ9BYB4 327 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 NBEAL2Q6ZNJ1 2754 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 IGHV4-28A0A0C4DH34 117 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 RPS10P46783 165 aaKnown RBP10.53□□□□□ -0.72
VRK3-212ENST00000596814 SMIM15Q7Z3B0 74 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 GATD1Q8NB37 220 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 PTH2Q96A98 100 aa10.53□□□□□ -0.72
VRK3-212ENST00000596814 NOP10Q9NPE3 64 aaKnown RBP10.53□□□□□ -0.72
VRK3-212ENST00000596814 MRPL16Q9NX20 251 aaKnown RBP10.53□□□□□ -0.72
VRK3-212ENST00000596814 TRGV1A0A0A0MS02 117 aa10.52□□□□□ -0.73
VRK3-212ENST00000596814 HLA-DQA1P01909 254 aa10.52□□□□□ -0.73
VRK3-212ENST00000596814 MT-ND6P03923 174 aa10.52□□□□□ -0.73
VRK3-212ENST00000596814 EMP1P54849 157 aa10.52□□□□□ -0.73
VRK3-212ENST00000596814 PIK3CD-AS1Q5SR53 167 aa10.52□□□□□ -0.73
VRK3-212ENST00000596814 Q8NAQ8 132 aa10.52□□□□□ -0.73
VRK3-212ENST00000596814 SPATA25Q9BR10 227 aa10.51□□□□□ -0.73
VRK3-212ENST00000596814 TMEM191AQ9H0A3 160 aa10.51□□□□□ -0.73
VRK3-212ENST00000596814 EVI2AP22794 236 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 LGALS9BQ3B8N2 356 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 FRZBQ92765 325 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 TM2D3Q9BRN9 247 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 NDUFAF3Q9BU61 184 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 TRAPPC1Q9Y5R8 145 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 Q6ZTI0 123 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 RASL10AQ92737 203 aa10.5□□□□□ -0.73
VRK3-212ENST00000596814 MRPL18Q9H0U6 180 aaKnown RBP10.5□□□□□ -0.73
VRK3-212ENST00000596814 DEFB4AO15263 64 aa10.49□□□□□ -0.73
VRK3-212ENST00000596814 SMIM17P0DL12 118 aa10.49□□□□□ -0.73
VRK3-212ENST00000596814 C14orf178Q8N769 122 aaPredicted RBP10.49□□□□□ -0.73
VRK3-212ENST00000596814 DPH3P1Q9H4G8 78 aa10.49□□□□□ -0.73
VRK3-212ENST00000596814 JPT2Q9H910 190 aa10.49□□□□□ -0.73
VRK3-212ENST00000596814 A8MWV9 139 aa10.48□□□□□ -0.73
VRK3-212ENST00000596814 TRGC2P03986 189 aa10.48□□□□□ -0.73
VRK3-212ENST00000596814 DEFA6Q01524 100 aa10.48□□□□□ -0.73
VRK3-212ENST00000596814 FABP9Q0Z7S8 132 aa10.48□□□□□ -0.73
VRK3-212ENST00000596814 SLAQ13239 276 aa10.48□□□□□ -0.73
VRK3-212ENST00000596814 AMN1Q8IY45 258 aa10.48□□□□□ -0.73
VRK3-212ENST00000596814 A0A087WWL8 130 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 LYRM9A8MSI8 78 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 APCSP02743 223 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 FAM104BQ5XKR9 115 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 B9D2Q9BPU9 175 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 NACAE9PAV3 2078 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms