RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 DNLZQ5SXM8 178 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 AMTNQ6UX39 209 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 PRIMA1Q86XR5 153 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 BAGE3Q86Y29 109 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 C16orf74Q96GX8 76 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 TMEM191AQ9H0A3 160 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 DPH3P1Q9H4G8 78 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 XCL2Q9UBD3 114 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 NOTCH2Q04721 2471 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BKO60814 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 PPP1R17O96001 155 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BJP06899 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 MGPP08493 103 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BOP23527 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 CKS2P33552 79 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BBP33778 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BDP58876 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BCP62807 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST2H2BEQ16778 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.56□□□□□ -1.68
LIG3-206ENST00000586058 ZNF493Q6ZR52 646 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 ORMDL3Q8N138 153 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 Q8N1Y9 231 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 WFDC9Q8NEX5 89 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 OR10AG1Q8NH19 301 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BHQ93079 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BNQ99877 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 HIST1H2BMQ99879 126 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 LINC00467Q9BRT7 94 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 SPXQ9BT56 116 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 CNFNQ9BYD5 112 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 LAMTOR2Q9Y2Q5 125 aa4.56□□□□□ -1.68
LIG3-206ENST00000586058 SETXQ7Z333 2677 aaKnown RBP4.56□□□□□ -1.68
LIG3-206ENST00000586058 CUBNO60494 3623 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 C2CD3Q4AC94 2353 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 MUC21A0A0G2JKD1 596 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 KIR2DL5BA0A0G2JN68 375 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 KIR2DL5BA0A0G2JPC4 375 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 MUC21A0A140T8X8 626 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 H7C1H1 209 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 UBE2CO00762 179 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 ZNF324O75467 553 aaPredicted RBP4.55□□□□□ -1.68
LIG3-206ENST00000586058 SLAQ13239 276 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 KIR3DS1Q14943 382 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 ZNF56Q15929 161 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 RRN3P1Q2M238 152 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 KIR2DL5AQ8N109 375 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 DEFB125Q8N687 156 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 GATD1Q8NB37 220 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 KIR2DL5BQ8NHK3 375 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 TMEM263Q8WUH6 116 aaKnown RBP4.55□□□□□ -1.68
LIG3-206ENST00000586058 TMEM18Q96B42 140 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 MRAP2Q96G30 205 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 RCHY1Q96PM5 261 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 NDUFAF3Q9BU61 184 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 SAMD10Q9BYL1 202 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 CSTL1Q9H114 145 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 WFDC10AQ9H1F0 79 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 MAP1LC3AQ9H492 121 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 C11orf21Q9P2W6 132 aa4.55□□□□□ -1.68
LIG3-206ENST00000586058 IGHV4-4A0A075B6R2 117 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 IGHV3-16A0A0C4DH30 117 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 RBMY1BA6NDE4 496 aaKnown RBP4.54□□□□□ -1.68
LIG3-206ENST00000586058 RBMY1EA6NEQ0 496 aaKnown RBP4.54□□□□□ -1.68
LIG3-206ENST00000586058 A8MWV9 139 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 D6R8Y8 96 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 F5H697 171 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 M0R2P5 195 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 RHODO00212 210 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 CRXO43186 299 aaPredicted RBP4.54□□□□□ -1.68
LIG3-206ENST00000586058 GNRH2O43555 120 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 HSBP1O75506 76 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 RBMY1DP0C7P1 496 aaKnown RBP4.54□□□□□ -1.68
LIG3-206ENST00000586058 RNASE3P12724 160 aaKnown RBP4.54□□□□□ -1.68
LIG3-206ENST00000586058 AKR1D1P51857 326 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 KIAA1644Q3SXP7 199 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 ZNF876PQ49A33 203 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 FAM74A4Q5TZK3 123 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 FAM104BQ5XKR9 115 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 RNASEKQ6P5S7 137 aaKnown RBP4.54□□□□□ -1.68
LIG3-206ENST00000586058 FA2HQ7L5A8 372 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 AMN1Q8IY45 258 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 C9orf85Q96MD7 179 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 PRELID3AQ96N28 172 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 SORL1Q92673 2214 aa4.54□□□□□ -1.68
LIG3-206ENST00000586058 MUC4Q99102 2169 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 SMIM9A6NGZ8 99 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 NXPH4O95158 308 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 PMCHP20382 165 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 RIPPLY3P57055 190 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 SNRPEP62304 92 aaKnown RBP4.53□□□□□ -1.68
LIG3-206ENST00000586058 Q0VG73 95 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 PIK3CD-AS1Q5SR53 167 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 PRSS3P2Q8NHM4 247 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 TP53TG3Q9ULZ0 132 aa4.53□□□□□ -1.68
LIG3-206ENST00000586058 KRTAP4-8A0A0G2JLE6 195 aa4.52□□□□□ -1.69
LIG3-206ENST00000586058 TEX48A0A1B0GUV7 120 aa4.52□□□□□ -1.69
LIG3-206ENST00000586058 C5orf52A6NGY3 159 aa4.52□□□□□ -1.69
LIG3-206ENST00000586058 PHOX2AO14813 284 aa4.52□□□□□ -1.69
LIG3-206ENST00000586058 CIDEAO60543 219 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms