RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ZFP82Q8N141 532 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 GATD1Q8NB37 220 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 SYT8Q8NBV8 401 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 C16orf74Q96GX8 76 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 TPPP3Q9BW30 176 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 GNB1LQ9BYB4 327 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 PHLDA3Q9Y5J5 127 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 H3BVH4 76 aa11.07□□□□□ -0.64
SS18-215ENST00000580642 RAB5AP20339 215 aa11.07□□□□□ -0.64
SS18-215ENST00000580642 RNASE8Q8TDE3 154 aaKnown RBP11.07□□□□□ -0.64
SS18-215ENST00000580642 RNF183Q96D59 192 aa11.07□□□□□ -0.64
SS18-215ENST00000580642 RCHY1Q96PM5 261 aa11.07□□□□□ -0.64
SS18-215ENST00000580642 MGAM2Q2M2H8 2515 aa11.06□□□□□ -0.64
SS18-215ENST00000580642 FRMD6-AS1P0C7T7 363 aa11.06□□□□□ -0.64
SS18-215ENST00000580642 DAZ2Q13117 558 aaKnown RBP11.06□□□□□ -0.64
SS18-215ENST00000580642 SPANXN1Q5VSR9 72 aa11.06□□□□□ -0.64
SS18-215ENST00000580642 C11orf72Q8NBR9 251 aa11.06□□□□□ -0.64
SS18-215ENST00000580642 MDFICQ9P1T7 246 aa11.06□□□□□ -0.64
SS18-215ENST00000580642 M0R2P5 195 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 HLA-DQA1P01909 254 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 TRGC1P0CF51 173 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 NTF3P20783 257 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 TWIST1Q15672 202 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 LGALS9BQ3B8N2 356 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 MRPL54Q6P161 138 aaKnown RBP11.05□□□□□ -0.64
SS18-215ENST00000580642 SMIM15Q7Z3B0 74 aa11.05□□□□□ -0.64
SS18-215ENST00000580642 IGHV3OR16-12A0A075B7B8 117 aa11.04□□□□□ -0.64
SS18-215ENST00000580642 SPRY2O43597 315 aa11.04□□□□□ -0.64
SS18-215ENST00000580642 MIFP14174 115 aa11.04□□□□□ -0.64
SS18-215ENST00000580642 HTN1P15515 57 aa11.04□□□□□ -0.64
SS18-215ENST00000580642 OR10AG1Q8NH19 301 aa11.04□□□□□ -0.64
SS18-215ENST00000580642 IL17DQ8TAD2 202 aa11.04□□□□□ -0.64
SS18-215ENST00000580642 SNURFLB1AK76 121 aa11.03□□□□□ -0.64
SS18-215ENST00000580642 FRZBQ92765 325 aa11.03□□□□□ -0.64
SS18-215ENST00000580642 OVOL2Q9BRP0 275 aa11.03□□□□□ -0.64
SS18-215ENST00000580642 TMEM191AQ9H0A3 160 aa11.03□□□□□ -0.64
SS18-215ENST00000580642 X6R8D5 127 aa11.03□□□□□ -0.64
SS18-215ENST00000580642 K7EIL1 84 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 SPINK4O60575 86 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 AZU1P20160 251 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 DEFB135Q30KP9 77 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 DMRTA1Q5VZB9 504 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 TMEM136Q6ZRR5 245 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 RASL10AQ92737 203 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 AP1S3Q96PC3 154 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 GSN-AS1Q9NRJ2 163 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 TIMM8BQ9Y5J9 83 aaPredicted RBP11.02□□□□□ -0.65
SS18-215ENST00000580642 DNAH3Q8TD57 4116 aa11.02□□□□□ -0.65
SS18-215ENST00000580642 A8MWV9 139 aa11.01□□□□□ -0.65
SS18-215ENST00000580642 CIDEAO60543 219 aa11.01□□□□□ -0.65
SS18-215ENST00000580642 RPS10P46783 165 aaKnown RBP11.01□□□□□ -0.65
SS18-215ENST00000580642 CAMPP49913 170 aa11.01□□□□□ -0.65
SS18-215ENST00000580642 ZNF876PQ49A33 203 aa11.01□□□□□ -0.65
SS18-215ENST00000580642 OR11H2Q8NH07 326 aa11.01□□□□□ -0.65
SS18-215ENST00000580642 DNHD1Q96M86 4753 aa11□□□□□ -0.65
SS18-215ENST00000580642 M0R381 172 aa11□□□□□ -0.65
SS18-215ENST00000580642 TRAPPC1Q9Y5R8 145 aa11□□□□□ -0.65
SS18-215ENST00000580642 NBEAL1Q6ZS30 2694 aa10.99□□□□□ -0.65
SS18-215ENST00000580642 TEX48A0A1B0GUV7 120 aa10.99□□□□□ -0.65
SS18-215ENST00000580642 PLAC8L1A1L4L8 177 aa10.99□□□□□ -0.65
SS18-215ENST00000580642 RAB4BP61018 213 aa10.99□□□□□ -0.65
SS18-215ENST00000580642 C18orf15Q96N68 181 aa10.99□□□□□ -0.65
SS18-215ENST00000580642 NOTCH1P46531 2555 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 LYRM9A8MSI8 78 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 APCSP02743 223 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 PPBPP02775 128 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 SMIM17P0DL12 118 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 FAM104BQ5XKR9 115 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.98□□□□□ -0.65
SS18-215ENST00000580642 SPATA25Q9BR10 227 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 MRPL18Q9H0U6 180 aaKnown RBP10.98□□□□□ -0.65
SS18-215ENST00000580642 DPH3P1Q9H4G8 78 aa10.98□□□□□ -0.65
SS18-215ENST00000580642 RHODO00212 210 aa10.97□□□□□ -0.65
SS18-215ENST00000580642 DEFB121Q5J5C9 76 aa10.97□□□□□ -0.65
SS18-215ENST00000580642 POM121L12Q8N7R1 296 aa10.97□□□□□ -0.65
SS18-215ENST00000580642 Q8NAQ8 132 aa10.97□□□□□ -0.65
SS18-215ENST00000580642 TM2D3Q9BRN9 247 aa10.97□□□□□ -0.65
SS18-215ENST00000580642 MSRB1Q9NZV6 116 aa10.97□□□□□ -0.65
SS18-215ENST00000580642 MUC21A0A0G2JKD1 596 aa10.96□□□□□ -0.65
SS18-215ENST00000580642 MUC21A0A140T8X8 626 aa10.96□□□□□ -0.65
SS18-215ENST00000580642 PRM2P04554 102 aa10.96□□□□□ -0.65
SS18-215ENST00000580642 ZFP2Q6ZN57 461 aa10.96□□□□□ -0.65
SS18-215ENST00000580642 LINC00612Q8N6U2 182 aa10.96□□□□□ -0.65
SS18-215ENST00000580642 NOP10Q9NPE3 64 aaKnown RBP10.96□□□□□ -0.65
SS18-215ENST00000580642 KIF25-AS1Q9Y6Z4 181 aa10.96□□□□□ -0.65
SS18-215ENST00000580642 IGHV4-28A0A0C4DH34 117 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 C1orf196B1AJZ1 125 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 PHOX2AO14813 284 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 RS1O15537 224 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 TRGC2P03986 189 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 EVI2AP22794 236 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 FABP9Q0Z7S8 132 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 MRAP2Q96G30 205 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 C11orf68Q9H3H3 251 aaKnown RBP10.95□□□□□ -0.66
SS18-215ENST00000580642 LAMTOR2Q9Y2Q5 125 aa10.95□□□□□ -0.66
SS18-215ENST00000580642 TRGV1A0A0A0MS02 117 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 PPP1R17O96001 155 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 PRB2P02812 416 aaPredicted RBP10.94□□□□□ -0.66
SS18-215ENST00000580642 CRYGDP07320 174 aa10.94□□□□□ -0.66
SS18-215ENST00000580642 RAB4AP20338 218 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms