RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	HLA-DRB4	X5D2U9	266 aa		12.94	□□□□□ -0.34
VPS53-215	ENST00000573028	MYMX	A0A1B0GTQ4	84 aa		12.94	□□□□□ -0.34
VPS53-215	ENST00000573028	SPOCK3	Q9BQ16	436 aa		12.94	□□□□□ -0.34
VPS53-215	ENST00000573028	PRADC1	Q9BSG0	188 aa		12.94	□□□□□ -0.34
VPS53-215	ENST00000573028	GTSF1L	Q9H1H1	148 aa		12.94	□□□□□ -0.34
VPS53-215	ENST00000573028	JPT2	Q9H910	190 aa		12.94	□□□□□ -0.34
VPS53-215	ENST00000573028	PRSS29P	A6NIE9	313 aa		12.93	□□□□□ -0.34
VPS53-215	ENST00000573028	TMEM238	C9JI98	176 aa		12.93	□□□□□ -0.34
VPS53-215	ENST00000573028		F5H697	171 aa		12.93	□□□□□ -0.34
VPS53-215	ENST00000573028	FOXI2	Q6ZQN5	318 aa		12.93	□□□□□ -0.34
VPS53-215	ENST00000573028	ABCA2	Q9BZC7	2435 aa		12.93	□□□□□ -0.34
VPS53-215	ENST00000573028	ZNF815P	A8K554	130 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	KLHL30-AS1	Q8NEE0	82 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	BAALC	Q8WXS3	180 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	TOMM6	Q96B49	74 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	FAM223B	A6NKX1	122 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	PRSS47	A8MTI9	375 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	EDN2	P20800	178 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	SRSF9	Q13242	221 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	FAM223A	Q8IWN6	122 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028		A0A087WWL8	130 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	OVOL1	O14753	267 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	DUSP14	O95147	198 aa	Known RBP	12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	IGKV3-20	P01619	116 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	NEXN-AS1	Q8NBZ9	246 aa		12.92	□□□□□ -0.34
VPS53-215	ENST00000573028	SLC25A16	P16260	332 aa		12.91	□□□□□ -0.34
VPS53-215	ENST00000573028	BLCAP	P62952	87 aa		12.91	□□□□□ -0.34
VPS53-215	ENST00000573028	RHPN1-AS1	Q9BWJ2	59 aa		12.91	□□□□□ -0.34
VPS53-215	ENST00000573028		Q6ZS46	218 aa		12.91	□□□□□ -0.34
VPS53-215	ENST00000573028	TRAV12-1	A0A0B4J245	112 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028		H3BUX3	64 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	LGALS1	P09382	135 aa	Known RBP	12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	IGHV4-38-2	P0DP08	117 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	FAM74A4	Q5TZK3	123 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	TSSC4	Q9Y5U2	329 aa	Predicted RBP	12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	TRBV7-3	A0A075B6L6	115 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	C19orf84	I3L1E1	186 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	SMAGP	Q0VAQ4	97 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	C20orf78	Q9BR46	151 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	LENEP	Q9Y5L5	61 aa		12.9	□□□□□ -0.34
VPS53-215	ENST00000573028	RNASE3	P12724	160 aa	Known RBP	12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	RRN3P1	Q2M238	152 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	PLEKHB2	Q96CS7	222 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	MRPL16	Q9NX20	251 aa	Known RBP	12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	PGPEP1	Q9NXJ5	209 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	IGHV1-69D	A0A0B4J2H0	117 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	NDUFA4	O00483	81 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	IGHV1-69	P01742	117 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	TAL2	Q16559	108 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	MUC4	Q99102	2169 aa		12.89	□□□□□ -0.35
VPS53-215	ENST00000573028	APOM	O95445	188 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	RPL39	P62891	51 aa	Known RBP	12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	KLK9	Q2XQG4	91 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	GAGE13	Q4V321	117 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	KLK9	Q9UKQ9	250 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	TP53TG1	Q9Y2A0	90 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	LOC107984156	A0A0G2JMH3	177 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	HOXA3	O43365	443 aa	Predicted RBP	12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	ARL17A	Q8IVW1	177 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	TRAV12-3	A0A0B4J271	114 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	IGHV4-39	P01824	125 aa		12.88	□□□□□ -0.35
VPS53-215	ENST00000573028	UCN	P55089	124 aa		12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	FAM159A	Q6UWV7	190 aa		12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	SPANXB1	Q9NS25	103 aa	Predicted RBP	12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	IGHV4-61	A0A0C4DH41	118 aa		12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	SOCS3	O14543	225 aa		12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	CD7	P09564	240 aa		12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	SAMD13	Q5VXD3	122 aa		12.87	□□□□□ -0.35
VPS53-215	ENST00000573028	RNF223	E7ERA6	249 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028		F8W1H4	67 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028		A0A1B0GWB2	263 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028	LINC01549	A6NIU2	74 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028	INSL3	P51460	131 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028	TMEM95	Q3KNT9	176 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028	AZU1	P20160	251 aa		12.86	□□□□□ -0.35
VPS53-215	ENST00000573028	ZNF256	Q9Y2P7	627 aa	Predicted RBP	12.86	□□□□□ -0.35
VPS53-215	ENST00000573028	C11orf86	A6NJI1	115 aa		12.85	□□□□□ -0.35
VPS53-215	ENST00000573028	TMEM170B	Q5T4T1	132 aa		12.85	□□□□□ -0.35
VPS53-215	ENST00000573028	TGFA	P01135	160 aa		12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	C19orf54	Q5BKX5	351 aa		12.84	□□□□□ -0.35
VPS53-215	ENST00000573028		J3QR89	54 aa		12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	SPAG8	Q99932	426 aa	Predicted RBP	12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	CRYBG3	Q68DQ2	2970 aa		12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	USP9Y	O00507	2555 aa	Predicted RBP	12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	TRAV12-2	A0A075B6T6	113 aa		12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	MORN3	Q6PF18	240 aa	Predicted RBP	12.84	□□□□□ -0.35
VPS53-215	ENST00000573028	ZNF688	P0C7X2	276 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	GAGE12H	A6NDE8	117 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	SUMO4	Q6EEV6	95 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	ZNF418	Q8TF45	676 aa	Predicted RBP	12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	CELSR2	Q9HCU4	2923 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	CRYGD	P07320	174 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	PSMB2	P49721	201 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	SIGMAR1	Q99720	223 aa		12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	DAZ1	Q9NQZ3	744 aa	Known RBP	12.83	□□□□□ -0.36
VPS53-215	ENST00000573028	ZFP2	Q6ZN57	461 aa		12.82	□□□□□ -0.36
VPS53-215	ENST00000573028	KIR2DL4	Q99706	377 aa		12.82	□□□□□ -0.36
VPS53-215	ENST00000573028	USMG5	Q96IX5	58 aa		12.82	□□□□□ -0.36
VPS53-215	ENST00000573028	SDHAF1	A6NFY7	115 aa		12.81	□□□□□ -0.36
VPS53-215	ENST00000573028	TSHB	P01222	138 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 68 ms