RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZNF575Q86XF7 245 aa9.11□□□□□ -0.95
SHMT2-230ENST00000557427 TMEM256Q8N2U0 113 aa9.11□□□□□ -0.95
SHMT2-230ENST00000557427 RNF182Q8N6D2 247 aa9.11□□□□□ -0.95
SHMT2-230ENST00000557427 C16orf92Q96LL3 132 aa9.11□□□□□ -0.95
SHMT2-230ENST00000557427 A0A1B0GUT8 65 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 TMEM189A5PLL7 270 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 SOCS3O14543 225 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 APOC4P55056 127 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 S100A12P80511 92 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 SLAQ13239 276 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 RIGQ13278 110 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 Q8TAT8 98 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 LENEPQ9Y5L5 61 aa9.1□□□□□ -0.95
SHMT2-230ENST00000557427 PRSS29PA6NIE9 313 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 FABP5P3A8MUU1 101 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 RTL8CO15255 209 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 SPRY2O43597 315 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 SERF1AO75920 110 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 GZMBP10144 247 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 SRIP30626 198 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 CAMPP49913 170 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 ZNF138P52744 262 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 LINC00310P59036 64 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 ERCC8Q13216 396 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 KIAA1644Q3SXP7 199 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 TMEM78Q5T7P6 136 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 SAMD13Q5VXD3 122 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 BAGE3Q86Y29 109 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 AGPAT4-IT1Q9H0P7 198 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 MAP6D1Q9H9H5 199 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 NRN1Q9NPD7 142 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 NIT2Q9NQR4 276 aa9.09□□□□□ -0.95
SHMT2-230ENST00000557427 NUPR1O60356 82 aa9.08□□□□□ -0.96
SHMT2-230ENST00000557427 PRB4P10163 310 aaPredicted RBP9.08□□□□□ -0.96
SHMT2-230ENST00000557427 ZNF80P51504 273 aaPredicted RBP9.08□□□□□ -0.96
SHMT2-230ENST00000557427 DEFB131AP59861 70 aa9.08□□□□□ -0.96
SHMT2-230ENST00000557427 HIST1H1AQ02539 215 aaPredicted RBP9.08□□□□□ -0.96
SHMT2-230ENST00000557427 JOSD1Q15040 202 aaPredicted RBP9.08□□□□□ -0.96
SHMT2-230ENST00000557427 DEFB135Q30KP9 77 aa9.08□□□□□ -0.96
SHMT2-230ENST00000557427 BORCS7Q96B45 105 aa9.08□□□□□ -0.96
SHMT2-230ENST00000557427 UBR4Q5T4S7 5183 aa9.08□□□□□ -0.96
SHMT2-230ENST00000557427 LINC01559Q495D7 138 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 Q6ZWC4 215 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 ZNF738Q8NE65 137 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 C18orf32Q8TCD1 76 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 LINC00477Q96M19 166 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 ALKBH7Q9BT30 221 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-230ENST00000557427 CSTL1Q9H114 145 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 TP53TG1Q9Y2A0 90 aa9.07□□□□□ -0.96
SHMT2-230ENST00000557427 KIR2DL5BA0A0G2JN68 375 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 KIR2DL5BA0A0G2JPC4 375 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 F2Z2F3 143 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 ARMS2P0C7Q2 107 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 CTRLP40313 264 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 KIR2DL5AQ8N109 375 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 KIR2DL5BQ8NHK3 375 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 RNF183Q96D59 192 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 KCNS1Q96KK3 526 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 C20orf173Q96LM9 149 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 SSBP4Q9BWG4 385 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-230ENST00000557427 APLNQ9ULZ1 77 aa9.06□□□□□ -0.96
SHMT2-230ENST00000557427 TRBV7-9A0A0J9YWB2 115 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 K7EQG2 157 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 ZNF688P0C7X2 276 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 IGLC6P0CF74 106 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 NANOS2P60321 138 aaKnown RBP9.05□□□□□ -0.96
SHMT2-230ENST00000557427 DMRTA1Q5VZB9 504 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 ZNF493Q6ZR52 646 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 MAPKAPK5-AS1Q8N8E1 139 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 FER1L6-AS1Q8NA97 138 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 OR10J6PQ8NGY7 276 aa9.05□□□□□ -0.96
SHMT2-230ENST00000557427 TRAV2A0A0B4J234 112 aa9.04□□□□□ -0.96
SHMT2-230ENST00000557427 PCP4L1A6NKN8 68 aa9.04□□□□□ -0.96
SHMT2-230ENST00000557427 KNCNA6PVL3 124 aa9.04□□□□□ -0.96
SHMT2-230ENST00000557427 ID1P41134 155 aa9.04□□□□□ -0.96
SHMT2-230ENST00000557427 LYZL1Q6UWQ5 148 aa9.04□□□□□ -0.96
SHMT2-230ENST00000557427 STHQ8IWL8 128 aa9.04□□□□□ -0.96
SHMT2-230ENST00000557427 TMSB15BA0A087X1C1 80 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 ORM1P02763 201 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 GPX1P07203 203 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 DCANP1Q8TF63 244 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 FAM19A4Q96LR4 140 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 CNFNQ9BYD5 112 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 SAMD10Q9BYL1 202 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 GSN-AS1Q9NRJ2 163 aa9.03□□□□□ -0.96
SHMT2-230ENST00000557427 APOBP04114 4563 aaKnown RBP9.02□□□□□ -0.97
SHMT2-230ENST00000557427 ZNF324O75467 553 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-230ENST00000557427 IQCJQ1A5X6 159 aa9.02□□□□□ -0.97
SHMT2-230ENST00000557427 PSMG4Q5JS54 123 aa9.02□□□□□ -0.97
SHMT2-230ENST00000557427 CDPF1Q6NVV7 123 aa9.02□□□□□ -0.97
SHMT2-230ENST00000557427 OR8A1Q8NGG7 326 aa9.02□□□□□ -0.97
SHMT2-230ENST00000557427 LRP1BQ9NZR2 4599 aa9.02□□□□□ -0.97
SHMT2-230ENST00000557427 TCTAP57738 103 aa9.01□□□□□ -0.97
SHMT2-230ENST00000557427 ZFAND2AQ8N6M9 145 aa9.01□□□□□ -0.97
SHMT2-230ENST00000557427 OR11H2Q8NH07 326 aa9.01□□□□□ -0.97
SHMT2-230ENST00000557427 TPPP3Q9BW30 176 aa9.01□□□□□ -0.97
SHMT2-230ENST00000557427 IGKV3D-20A0A0C4DH25 116 aa9□□□□□ -0.97
SHMT2-230ENST00000557427 AMTP48728 403 aa9□□□□□ -0.97
SHMT2-230ENST00000557427 SNRPD3P62318 126 aaKnown RBP9□□□□□ -0.97
SHMT2-230ENST00000557427 FAM104BQ5XKR9 115 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms