RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 EP300Q09472 2414 aaPredicted RBP1.23□□□□□ -2.21
SCFD1-221ENST00000556534 LOC110117498A0A087WWA1 95 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 TRBV7-6A0A0J9YX20 115 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 LOC107984640A0A0U1RRK4 108 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 C5orf67F2Z3F1 127 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 CCL16O15467 120 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 ERC2-IT1O76042 136 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 Q5XG85 94 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 SMIM5Q71RC9 77 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 LINC00305Q7Z4B0 112 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 ARPINQ7Z6K5 226 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 CCL4L1Q8NHW4 92 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 CDC42SE1Q9NRR8 79 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 ARFGEF1Q9Y6D6 1849 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 ATRQ13535 2644 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 CHD9Q3L8U1 2897 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 JMJD1CQ15652 2540 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 KIAA1551Q9HCM1 1747 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 PARP4Q9UKK3 1724 aaKnown RBP1.23□□□□□ -2.21
SCFD1-221ENST00000556534 CLIP1P30622 1438 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 ARHGAP31Q2M1Z3 1444 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 CRYBG3Q68DQ2 2970 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 KIF1AQ12756 1690 aa1.23□□□□□ -2.21
SCFD1-221ENST00000556534 PIK3C2BO00750 1634 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 STAB1Q9NY15 2570 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 PCNX1Q96RV3 2341 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 INO80Q9ULG1 1556 aaPredicted RBP1.22□□□□□ -2.21
SCFD1-221ENST00000556534 TRAV27A0A087WT01 109 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 J3KT08 172 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 RPS28P62857 69 aaKnown RBP1.22□□□□□ -2.21
SCFD1-221ENST00000556534 OR8B8Q15620 311 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 VMA21Q3ZAQ7 101 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 LRRC18Q8N456 261 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 TMEM229BQ8NBD8 167 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 C4orf3Q8WVX3 66 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 PSMF1Q92530 271 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 LINC00052Q96N35 136 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 LXNQ9BS40 222 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 CBLN4Q9NTU7 201 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 JPT1Q9UK76 154 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 DLG5Q8TDM6 1919 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 NIPBLQ6KC79 2804 aaeCLIP1.22□□□□□ -2.21
SCFD1-221ENST00000556534 FREM3P0C091 2139 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 TROQ12816 1431 aaPredicted RBP1.22□□□□□ -2.21
SCFD1-221ENST00000556534 LRBAP50851 2863 aa1.22□□□□□ -2.21
SCFD1-221ENST00000556534 CDC42BPGQ6DT37 1551 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 SPENQ96T58 3664 aaKnown RBP1.21□□□□□ -2.22
SCFD1-221ENST00000556534 FLG2Q5D862 2391 aaPredicted RBP1.21□□□□□ -2.22
SCFD1-221ENST00000556534 XRN1Q8IZH2 1706 aaKnown RBP1.21□□□□□ -2.22
SCFD1-221ENST00000556534 MTORP42345 2549 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 POLEQ07864 2286 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 MYO18AQ92614 2054 aaKnown RBP1.21□□□□□ -2.22
SCFD1-221ENST00000556534 COL1A1P02452 1464 aaPredicted RBP1.21□□□□□ -2.22
SCFD1-221ENST00000556534 IGKV3-7A0A075B6H7 116 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 TRAV36DV7A0A075B6V5 113 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 TRBV27A0A0K0K1C4 114 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 C9orf170A2RU37 121 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 CXCL8P10145 99 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 SCGB1A1P11684 91 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 PSG9Q00887 426 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 C2orf82Q6UX34 121 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 DEFB119Q8N690 84 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 OR5H6Q8NGV6 325 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 PRELID3AQ96N28 172 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 MCEEQ96PE7 176 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 PPIP5K1Q6PFW1 1433 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 ADGRB1O14514 1584 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 CCDC168Q8NDH2 2452 aa1.21□□□□□ -2.22
SCFD1-221ENST00000556534 CEP152O94986 1710 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 NALCNQ8IZF0 1738 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 CHD7Q9P2D1 2997 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 COL4A6Q14031 1691 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 ITPR2Q14571 2701 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 MBD5Q9P267 1494 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 CLTCL1P53675 1640 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 IGF2RP11717 2491 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 TRAV13-1A0A0B4J241 112 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 TRBV6-4A0A1B0GX49 114 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 A0A1B0GX51 115 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 IGKV2-29A2NJV5 120 aaPredicted RBP1.2□□□□□ -2.22
SCFD1-221ENST00000556534 ARL5CA6NH57 179 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 M0R2N4 97 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 DEGS1O15121 323 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 INE1O15225 51 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 ARPC5O15511 151 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 LYRM1O43325 122 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 LYNX1P0DP58 116 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 FABP4P15090 132 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 NDUFA6P56556 154 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 SPRNQ5BIV9 151 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 OR5AS1Q8N127 324 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 LINC00269Q8N2A0 174 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 MORN4Q8NDC4 146 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 OR4B1Q8NGF8 309 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 OBSCN-AS1Q96MR7 158 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 BATF3Q9NR55 127 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 SNURFQ9Y675 71 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 NSD3Q9BZ95 1437 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 PTPRDP23468 1912 aa1.2□□□□□ -2.22
SCFD1-221ENST00000556534 FLNAP21333 2647 aaKnown RBP1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 230.8 ms