RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ODF1Q14990 250 aa13.87□□□□□ -0.19
PRPF40B-208ENST00000548436 SAMD13Q5VXD3 122 aa13.87□□□□□ -0.19
PRPF40B-208ENST00000548436 SMIM17P0DL12 118 aa13.87□□□□□ -0.19
PRPF40B-208ENST00000548436 RASL10AQ92737 203 aa13.87□□□□□ -0.19
PRPF40B-208ENST00000548436 DPH3P1Q9H4G8 78 aa13.87□□□□□ -0.19
PRPF40B-208ENST00000548436 ELANEP08246 267 aa13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 PSMG4Q5JS54 123 aa13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 ZNF469Q96JG9 3925 aaPredicted RBP13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 PRSS1P07477 247 aa13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 DUX5Q96PT3 197 aa13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 ZMAT4Q9H898 229 aa13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 COX11Q9Y6N1 276 aa13.86□□□□□ -0.19
PRPF40B-208ENST00000548436 NAV2Q8IVL1 2488 aa13.85□□□□□ -0.19
PRPF40B-208ENST00000548436 C12orf54Q6X4T0 127 aa13.85□□□□□ -0.19
PRPF40B-208ENST00000548436 SMIM2Q9BVW6 85 aa13.85□□□□□ -0.19
PRPF40B-208ENST00000548436 K7EQG2 157 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 ORAOV1Q8WV07 137 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 RPL39LQ96EH5 51 aaKnown RBP13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 UBE2E2Q96LR5 201 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 Q96MF0 132 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 TENM4Q6N022 2769 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 TRAV12-3A0A0B4J271 114 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 LGALS9O00182 355 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 HOXD3P31249 432 aaPredicted RBP13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 BOD1L2Q8IYS8 172 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 LRRC75A-AS1Q8N1F1 130 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 FOXC2Q99958 501 aa13.84□□□□□ -0.19
PRPF40B-208ENST00000548436 SORL1Q92673 2214 aa13.83□□□□□ -0.19
PRPF40B-208ENST00000548436 MGPP08493 103 aa13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 FAM159AQ6UWV7 190 aa13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 A0A0J9YX75 114 aa13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 NXPH4O95158 308 aa13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 SUMO2P61956 95 aaKnown RBP13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 RNF152Q8N8N0 203 aa13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 HHLA3Q9XRX5 114 aa13.83□□□□□ -0.2
PRPF40B-208ENST00000548436 ATP5LO75964 103 aa13.82□□□□□ -0.2
PRPF40B-208ENST00000548436 IGKV3-20P01619 116 aa13.82□□□□□ -0.2
PRPF40B-208ENST00000548436 SNRPD3P62318 126 aaKnown RBP13.82□□□□□ -0.2
PRPF40B-208ENST00000548436 KRTAP1-3Q8IUG1 177 aa13.82□□□□□ -0.2
PRPF40B-208ENST00000548436 AP1S3Q96PC3 154 aa13.82□□□□□ -0.2
PRPF40B-208ENST00000548436 NBPF19A0A087WUL8 3843 aa13.82□□□□□ -0.2
PRPF40B-208ENST00000548436 C7orf71A4D174 169 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 C18orf65Q6ZTR6 163 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 PCP2Q8IVA1 136 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 C20orf78Q9BR46 151 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 APCP25054 2843 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 CREBBPQ92793 2442 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 NMUP48645 174 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 ZNF124Q15973 351 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 ODF3Q96PU9 254 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 KIF25-AS1Q9Y6Z4 181 aa13.81□□□□□ -0.2
PRPF40B-208ENST00000548436 FASNP49327 2511 aaKnown RBP13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 TRAV12-2A0A075B6T6 113 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 TAX1BP3O14907 124 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 IGKCP01834 107 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 CD7P09564 240 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 LINC00315P59091 139 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 ADAMTSL5Q6ZMM2 481 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 POM121L12Q8N7R1 296 aa13.8□□□□□ -0.2
PRPF40B-208ENST00000548436 JPT2Q9H910 190 aa13.79□□□□□ -0.2
PRPF40B-208ENST00000548436 GCN1Q92616 2671 aaKnown RBP13.79□□□□□ -0.2
PRPF40B-208ENST00000548436 DEFB136Q30KP8 78 aa13.79□□□□□ -0.2
PRPF40B-208ENST00000548436 IGKV2D-26A0A0A0MRZ7 120 aa13.78□□□□□ -0.2
PRPF40B-208ENST00000548436 DPM2O94777 84 aa13.78□□□□□ -0.2
PRPF40B-208ENST00000548436 SLURP1P55000 103 aa13.78□□□□□ -0.2
PRPF40B-208ENST00000548436 TMEM97Q5BJF2 176 aa13.78□□□□□ -0.2
PRPF40B-208ENST00000548436 Q8N2B8 174 aa13.78□□□□□ -0.2
PRPF40B-208ENST00000548436 MRPL35Q9NZE8 188 aaKnown RBP13.78□□□□□ -0.2
PRPF40B-208ENST00000548436 ORMDL2Q53FV1 153 aa13.77□□□□□ -0.21
PRPF40B-208ENST00000548436 TCTEX1D4Q5JR98 221 aa13.77□□□□□ -0.21
PRPF40B-208ENST00000548436 SPINK13Q1W4C9 94 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 ERASQ7Z444 233 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 OR9G4Q8NGQ1 327 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 TMEM160Q9NX00 188 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 IGHV3-16A0A0C4DH30 117 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 SIVA1O15304 175 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 CCL25O15444 150 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 CDKN1BP46527 198 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 TOMM6Q96B49 74 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 MDFICQ9P1T7 246 aa13.76□□□□□ -0.21
PRPF40B-208ENST00000548436 A0A087WX48 190 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 ZC2HC1BQ5TFG8 222 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 GTSCR1Q86UQ5 136 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 C9orf85Q96MD7 179 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 A0A087WWL8 130 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 K7EMI3 77 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 TTTY13Q9BZ97 58 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 CSTL1Q9H114 145 aa13.75□□□□□ -0.21
PRPF40B-208ENST00000548436 Q8N1Y9 231 aa13.74□□□□□ -0.21
PRPF40B-208ENST00000548436 PPP1R17O96001 155 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 PTTG1IPP53801 180 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 UBE2V1Q13404 147 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 SUMO4Q6EEV6 95 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 AMTNQ6UX39 209 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 FOXI2Q6ZQN5 318 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 NEGR1Q7Z3B1 354 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 SCGB3A1Q96QR1 104 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 AKAP9Q99996 3911 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 CBY3A6NI87 242 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms