RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 MRPL20Q9BYC9 149 aaKnown RBP4.06□□□□□ -1.76
USP28-213ENST00000544967 CRYBG3Q68DQ2 2970 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 IGKV1D-17A0A075B6S4 117 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 H3BRN7 92 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 M0R1B8 84 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 LGALS1P09382 135 aaKnown RBP4.06□□□□□ -1.76
USP28-213ENST00000544967 RPL35AP18077 110 aaKnown RBP4.06□□□□□ -1.76
USP28-213ENST00000544967 PRTN3P24158 256 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 CRIP1P50238 77 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 KRTAP1-1Q07627 177 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 AMTNQ6UX39 209 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 C1orf229Q6ZS94 237 aaPredicted RBP4.06□□□□□ -1.76
USP28-213ENST00000544967 PRNTQ86SH4 94 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 MAPKAPK5-AS1Q8N8E1 139 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 RASL10AQ92737 203 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 Q96MF0 132 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 WNT9BO14905 357 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 MRPS12O15235 138 aaKnown RBP4.05□□□□□ -1.76
USP28-213ENST00000544967 PRSS1P07477 247 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 EFNA4P52798 201 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 TEX36Q5VZQ5 186 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 RFESDQ8TAC1 157 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 CYSRT1A8MQ03 144 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 M0R2P5 195 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 CCL24O00175 119 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 IGHV4-39P01824 125 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 WT1-ASQ06250 92 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 LAGE3Q14657 143 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 GOLT1AQ6ZVE7 132 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 GTSCR1Q86UQ5 136 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 NDUFA11Q86Y39 141 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 LINC01561Q8N1V8 128 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 C10orf126Q8N4M7 172 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 ANKRD29Q8N6D5 301 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 LRRK2Q5S007 2527 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 A0A0B4J2C4 111 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 IGF1P05019 195 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 ACYP1P07311 99 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 VMA21Q3ZAQ7 101 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 ORMDL2Q53FV1 153 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 CD164L2Q6UWJ8 174 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 Q71RC1 249 aaPredicted RBP4.05□□□□□ -1.76
USP28-213ENST00000544967 C10orf105Q8TEF2 133 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 LINC00477Q96M19 166 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 DSCAML1Q8TD84 2053 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 SPTA1P02549 2419 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 USF3Q68DE3 2245 aa4.05□□□□□ -1.76
USP28-213ENST00000544967 LOC389332A0A1B0GUA5 103 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 J3QL48 77 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 SH2D1AO60880 128 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 IGHV1-46P01743 117 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 TMEM155Q4W5P6 130 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 CCL19Q99731 98 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 MRPL35Q9NZE8 188 aaKnown RBP4.04□□□□□ -1.76
USP28-213ENST00000544967 FZR1Q9UM11 496 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 IGHV3OR15-7A0A075B7D8 119 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 RBAKDNA6NC62 111 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 H3BT86 120 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 CCDC179H3BU77 68 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 VCYO14598 125 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 IGLV2-23P01705 113 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 FAM201AQ5SY85 155 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 LINC01587Q99440 93 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 KAAG1Q9UBP8 84 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 LRBAP50851 2863 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 TRAV40A0A0B4J280 105 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 IGHV1-69DA0A0B4J2H0 117 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 SLC25A20O43772 301 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 DUSP14O95147 198 aaKnown RBP4.04□□□□□ -1.76
USP28-213ENST00000544967 TCL1BO95988 128 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 FSHBP01225 129 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 PSMB2P49721 201 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 MLANAQ16655 118 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 NEXN-AS1Q8NBZ9 246 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 TOMM6Q96B49 74 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 PRO0628Q9UI54 55 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 SELENOKQ9Y6D0 94 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 X6R8D5 127 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 DSCAMO60469 2012 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 CSMD1Q96PZ7 3565 aa4.04□□□□□ -1.76
USP28-213ENST00000544967 ANK2Q01484 3957 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 ORM2P19652 201 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 TMEM170BQ5T4T1 132 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 RNF5Q99942 180 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 DCTN5Q9BTE1 182 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 AAMDCQ9H7C9 122 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 TRBV10-2A0A0K0K1G8 114 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 M0R381 172 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 PPP1R17O96001 155 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 HERVK_113P61574 105 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 EDDM3AQ14507 147 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 ASPHD1Q5U4P2 390 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 ZNF826PQ6ZT77 177 aa4.03□□□□□ -1.76
USP28-213ENST00000544967 TIMM8BQ9Y5J9 83 aaPredicted RBP4.03□□□□□ -1.76
USP28-213ENST00000544967 ANKRD17O75179 2603 aaKnown RBP4.03□□□□□ -1.76
USP28-213ENST00000544967 TRAV8-4A0A0B4J246 113 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 A0A0J9YX75 114 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 LGALS9O00182 355 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 CRLF1O75462 422 aa4.02□□□□□ -1.77
USP28-213ENST00000544967 IGKV1-16P04430 117 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms