RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 EPG5Q9HCE0 2579 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 ZFYVE26Q68DK2 2539 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 CD300EQ496F6 205 aaPredicted RBP10.38□□□□□ -0.75
VPS33A-208ENST00000543633 GAGE13Q4V321 117 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 SPATA25Q9BR10 227 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 PRADC1Q9BSG0 188 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 PRO0461Q9UI25 63 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 PRSS29PA6NIE9 313 aa10.37□□□□□ -0.75
VPS33A-208ENST00000543633 COX6B1P14854 86 aa10.37□□□□□ -0.75
VPS33A-208ENST00000543633 RPL39LQ96EH5 51 aaKnown RBP10.37□□□□□ -0.75
VPS33A-208ENST00000543633 CYSLTR1Q9Y271 337 aa10.37□□□□□ -0.75
VPS33A-208ENST00000543633 A0A1W2PPR1 153 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 HOXA3O43365 443 aaPredicted RBP10.36□□□□□ -0.75
VPS33A-208ENST00000543633 RNASE3P12724 160 aaKnown RBP10.36□□□□□ -0.75
VPS33A-208ENST00000543633 HERVK_113P61574 105 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 WFDC2Q14508 124 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 LYRM7Q5U5X0 104 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 C14orf178Q8N769 122 aaPredicted RBP10.36□□□□□ -0.75
VPS33A-208ENST00000543633 ATP6V0E2Q8NHE4 81 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 SIGMAR1Q99720 223 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 LRBAP50851 2863 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 HRNRQ86YZ3 2850 aaPredicted RBP10.36□□□□□ -0.75
VPS33A-208ENST00000543633 SPTBN1Q01082 2364 aaKnown RBP10.36□□□□□ -0.75
VPS33A-208ENST00000543633 MGPP08493 103 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 UBE2D1P51668 147 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 SCGB2A2Q13296 93 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 MORN3Q6PF18 240 aaPredicted RBP10.36□□□□□ -0.75
VPS33A-208ENST00000543633 BPESC1Q9GZL8 116 aa10.36□□□□□ -0.75
VPS33A-208ENST00000543633 ABCA4P78363 2273 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 ZNF815PA8K554 130 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 H3BMG7 143 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 IGHV1-69P01742 117 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 PRB1P04280 392 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 TMEM141Q96I45 108 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 UBTD1Q9HAC8 227 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 KIF25-AS1Q9Y6Z4 181 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 AGRNO00468 2067 aa10.35□□□□□ -0.75
VPS33A-208ENST00000543633 UNQ9165/PRO28630Q6UXU0 137 aa10.34□□□□□ -0.75
VPS33A-208ENST00000543633 TIMM17AQ99595 171 aa10.34□□□□□ -0.75
VPS33A-208ENST00000543633 KLK15Q9H2R5 256 aa10.34□□□□□ -0.75
VPS33A-208ENST00000543633 GAGE12HA6NDE8 117 aa10.34□□□□□ -0.75
VPS33A-208ENST00000543633 KLLNB2CW77 178 aa10.34□□□□□ -0.75
VPS33A-208ENST00000543633 IGHG2P01859 326 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 RNASE4P34096 147 aaKnown RBP10.33□□□□□ -0.76
VPS33A-208ENST00000543633 TMEM219Q86XT9 240 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 DLX4Q92988 240 aaPredicted RBP10.33□□□□□ -0.76
VPS33A-208ENST00000543633 TSSC4Q9Y5U2 329 aaPredicted RBP10.33□□□□□ -0.76
VPS33A-208ENST00000543633 DCHS2Q6V1P9 2916 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 COL12A1Q99715 3063 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 POLR2KP53803 58 aaKnown RBP10.33□□□□□ -0.76
VPS33A-208ENST00000543633 LINC00315P59091 139 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 PMVKQ15126 192 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 ZNF843Q8N446 348 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 PGPEP1Q9NXJ5 209 aa10.33□□□□□ -0.76
VPS33A-208ENST00000543633 FLNCQ14315 2725 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 TRBV6-5A0A0K0K1A5 114 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 IGIPA6NJ69 53 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 J3KRW8 73 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 ETDBQ3ZM63 59 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 SCGB1D4Q6XE38 83 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 ODF3Q96PU9 254 aa10.32□□□□□ -0.76
VPS33A-208ENST00000543633 SPAG8Q99932 426 aaPredicted RBP10.32□□□□□ -0.76
VPS33A-208ENST00000543633 IGLV4-69A0A075B6H9 119 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 C11orf86A6NJI1 115 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 C19orf84I3L1E1 186 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 K7EMT4 169 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 VCYO14598 125 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 TRBV12-3P01733 135 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 CRYGDP07320 174 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 AZU1P20160 251 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 MRPL16Q9NX20 251 aaKnown RBP10.31□□□□□ -0.76
VPS33A-208ENST00000543633 ZNF580Q9UK33 172 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 WNK2Q9Y3S1 2297 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 CIDEAO60543 219 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 DUSP14O95147 198 aaKnown RBP10.31□□□□□ -0.76
VPS33A-208ENST00000543633 ID1P41134 155 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 CFAP126Q5VTH2 177 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 ZFP2Q6ZN57 461 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 KIR2DL4Q99706 377 aa10.31□□□□□ -0.76
VPS33A-208ENST00000543633 DAZ1Q9NQZ3 744 aaKnown RBP10.31□□□□□ -0.76
VPS33A-208ENST00000543633 LGALS9O00182 355 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 GNRH2O43555 120 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 CD7P09564 240 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 UBE2D3P61077 147 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 UBE2D2P62837 147 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 AMTNQ6UX39 209 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 LCNL1Q6ZST4 164 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 RHPN1-AS1Q9BWJ2 59 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 C1QTNF4Q9BXJ3 329 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 TP53TG1Q9Y2A0 90 aa10.3□□□□□ -0.76
VPS33A-208ENST00000543633 TRBV27A0A0K0K1C4 114 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 A6NDX4 124 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 NDUFS8O00217 210 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 TSHBP01222 138 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 SRSF9Q13242 221 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS33A-208ENST00000543633 FAM159AQ6UWV7 190 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 SH2D6Q7Z4S9 175 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 ZNF462Q96JM2 2506 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 A0A0J9YY99 117 aa10.29□□□□□ -0.76
VPS33A-208ENST00000543633 SUMO4Q6EEV6 95 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms