RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 BAALCQ8WXS3 180 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 INMT-MINDY4F8WBC2 141 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 PLA2G1BP04054 148 aaKnown RBP10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 TCRAP04437 139 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 FAM74A1Q5RGS3 127 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 ARL6IP6Q8N6S5 226 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 C14orf178Q8N769 122 aaPredicted RBP10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 SAMD10Q9BYL1 202 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 PARLQ9H300 379 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 PSG8Q9UQ74 426 aa10.15□□□□□ -0.78
CLSTN3-213ENST00000541953 IGKV3D-20A0A0C4DH25 116 aa10.14□□□□□ -0.79
CLSTN3-213ENST00000541953 GGTLC3B5MD39 225 aa10.14□□□□□ -0.79
CLSTN3-213ENST00000541953 CYCSP99999 105 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-213ENST00000541953 ACOT6Q3I5F7 207 aaPredicted RBP10.14□□□□□ -0.79
CLSTN3-213ENST00000541953 OR10G9Q8NGN4 311 aa10.14□□□□□ -0.79
CLSTN3-213ENST00000541953 OR10G7Q8NGN6 311 aa10.14□□□□□ -0.79
CLSTN3-213ENST00000541953 UPK1BO75841 260 aa10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 STAG3L2P0CL84 134 aa10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 STAG3L3P0CL85 134 aa10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 MGST1P10620 155 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 UFSP1Q6NVU6 142 aa10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 OR2T35Q8NGX2 323 aa10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 TM2D2Q9BX73 214 aa10.13□□□□□ -0.79
CLSTN3-213ENST00000541953 A0A1W2PPV4 95 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 TAAR5O14804 337 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 CDC34P49427 236 aaPredicted RBP10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 PRNTQ86SH4 94 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 C5orf17Q8NAS9 161 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 SUN5Q8TC36 379 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 DEFB104AQ8WTQ1 72 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 PTH2Q96A98 100 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 LINC00479Q96M42 142 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 NDFIP1Q9BT67 221 aa10.12□□□□□ -0.79
CLSTN3-213ENST00000541953 GCHFRP30047 84 aa10.11□□□□□ -0.79
CLSTN3-213ENST00000541953 FLI1Q01543 452 aaPredicted RBP10.11□□□□□ -0.79
CLSTN3-213ENST00000541953 RAB24Q969Q5 203 aa10.11□□□□□ -0.79
CLSTN3-213ENST00000541953 MARVELD1Q9BSK0 173 aa10.11□□□□□ -0.79
CLSTN3-213ENST00000541953 TRAV8-3A0A0A6YYJ7 113 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 TRAV34A0A0B4J273 112 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 SSNA1O43805 119 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 CIDEAO60543 219 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 SMUG1Q53HV7 270 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 HSD17B11Q8NBQ5 300 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 CIRBP-AS1Q8TBR5 109 aa10.1□□□□□ -0.79
CLSTN3-213ENST00000541953 SUMO1P63165 101 aaKnown RBP10.09□□□□□ -0.79
CLSTN3-213ENST00000541953 ZFP2Q6ZN57 461 aa10.09□□□□□ -0.79
CLSTN3-213ENST00000541953 CHAC1Q9BUX1 264 aa10.09□□□□□ -0.79
CLSTN3-213ENST00000541953 SH3BGRL3Q9H299 93 aa10.09□□□□□ -0.79
CLSTN3-213ENST00000541953 NDUFA13Q9P0J0 144 aa10.09□□□□□ -0.79
CLSTN3-213ENST00000541953 EPDR1Q9UM22 224 aa10.09□□□□□ -0.79
CLSTN3-213ENST00000541953 SERTM2A0A1B0GWG4 89 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 H3BVH4 76 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 PET100P0DJ07 73 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 HNRNPA3P51991 378 aaKnown RBP10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 LGALSLQ3ZCW2 172 aaPredicted RBP10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 DMRTA1Q5VZB9 504 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 NIT1Q86X76 327 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 CYB561D1Q8N8Q1 229 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 S100ZQ8WXG8 99 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 KLK12Q9UKR0 248 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 BOLA1Q9Y3E2 137 aa10.08□□□□□ -0.8
CLSTN3-213ENST00000541953 IGKV2D-24A0A075B6R9 120 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 RNF222A6NCQ9 220 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 RBFOX3A6NFN3 312 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 A8MWV9 139 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 ATP6V0CP27449 155 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 ZFP69Q49AA0 526 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 LINC00299Q6ZSB3 139 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 OR2G3Q8NGZ4 309 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 ARL2-SNX15V9GYD0 113 aa10.07□□□□□ -0.8
CLSTN3-213ENST00000541953 CRIP1P50238 77 aa10.06□□□□□ -0.8
CLSTN3-213ENST00000541953 A0A087WWL8 130 aa10.05□□□□□ -0.8
CLSTN3-213ENST00000541953 S100A4P26447 101 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-213ENST00000541953 ZNF726P1Q15940 193 aa10.05□□□□□ -0.8
CLSTN3-213ENST00000541953 FAM74A4Q5TZK3 123 aa10.05□□□□□ -0.8
CLSTN3-213ENST00000541953 Q86TA4 180 aa10.05□□□□□ -0.8
CLSTN3-213ENST00000541953 UBE2WQ96B02 151 aa10.05□□□□□ -0.8
CLSTN3-213ENST00000541953 TNXBP22105 4242 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 GRIFINA4D1Z8 144 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 K7EQM0 130 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 M0R036 132 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 ASIPP42127 132 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 TOR2AQ5JU69 321 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 ZC2HC1AQ96GY0 325 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 IL36BQ9NZH7 164 aa10.04□□□□□ -0.8
CLSTN3-213ENST00000541953 B4DEV8 164 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 KRBOX1C9JBD0 128 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 IGLV2-8P01709 118 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 ARMS2P0C7Q2 107 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 Q5BKY6 102 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 PIK3CD-AS1Q5SR53 167 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 Q8N976 141 aa10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 PSMG3Q9BT73 122 aaPredicted RBP10.03□□□□□ -0.8
CLSTN3-213ENST00000541953 A0A087WWC5 75 aa10.02□□□□□ -0.81
CLSTN3-213ENST00000541953 UBE2G2P60604 165 aa10.02□□□□□ -0.81
CLSTN3-213ENST00000541953 SAPCD1Q5SSQ6 148 aa10.02□□□□□ -0.81
CLSTN3-213ENST00000541953 ATRAIDQ6UW56 229 aa10.02□□□□□ -0.81
CLSTN3-213ENST00000541953 TMEM167BQ9NRX6 74 aa10.02□□□□□ -0.81
CLSTN3-213ENST00000541953 FABP5P3A8MUU1 101 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 SH2D1AO60880 128 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 220.1 ms