RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ALX1Q15699 326 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 ZNF56Q15929 161 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 TMEM244Q5VVB8 128 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 AKAP14Q86UN6 197 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 ARL17AQ8IVW1 177 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 RREB1Q92766 1687 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 PLXNA2O75051 1894 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 NAV3Q8IVL0 2385 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 FRAS1Q86XX4 4008 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 TRBV20-1A0A075B6N2 111 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 SMIM24O75264 130 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 MPC1LP0DKB6 136 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 POLR2JP52435 117 aaKnown RBP0.06□□□□□ -2.4
VPS13A-213ENST00000539950 OR2T2Q6IF00 324 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 DYNLRB2Q8TF09 96 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 BANF2Q9H503 90 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 MRPL40Q9NQ50 206 aaKnown RBP0.06□□□□□ -2.4
VPS13A-213ENST00000539950 ZDBF2Q9HCK1 2354 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 FAT4Q6V0I7 4981 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 CDK13Q14004 1512 aaKnown RBP0.06□□□□□ -2.4
VPS13A-213ENST00000539950 TANC2Q9HCD6 1990 aa0.06□□□□□ -2.4
VPS13A-213ENST00000539950 DISP2A7MBM2 1401 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 CEP152O94986 1710 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 A0A087WTM6 91 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 RBP4P02753 201 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 IL7P13232 177 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 UNQ5815/PRO19632Q6UWF5 114 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 PPP1R1CQ8WVI7 109 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 AIF1LQ9BQI0 150 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 CALML5Q9NZT1 146 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 ERG28Q9UKR5 140 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 LSM2Q9Y333 95 aaKnown RBP0.05□□□□□ -2.4
VPS13A-213ENST00000539950 TANC1Q9C0D5 1861 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 ARHGEF10O15013 1369 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 ATG2AQ2TAZ0 1938 aa0.05□□□□□ -2.4
VPS13A-213ENST00000539950 BCORL1Q5H9F3 1711 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 BDP1A6H8Y1 2624 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 LAMB1P07942 1786 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 CASZ1Q86V15 1759 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 KNTC1P50748 2209 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 LOC105371267A0A1B0GV96 52 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 PITX3O75364 302 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 IGLC6P0CF74 106 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 SLC25A6P12236 298 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 CCL3L1P16619 93 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 CMPK1P30085 196 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 ELOF1P60002 83 aaKnown RBP0.04□□□□□ -2.4
VPS13A-213ENST00000539950 VMO1Q7Z5L0 202 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 SNX29P2Q8IUI4 249 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 MMGT1Q8N4V1 131 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 DSCR8Q96T75 97 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 PROK2Q9HC23 129 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 SAR1AQ9NR31 198 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 BET1LQ9NYM9 111 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 NOP16Q9Y3C1 178 aaKnown RBP0.04□□□□□ -2.4
VPS13A-213ENST00000539950 MYH1P12882 1939 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 TMEM2Q9UHN6 1383 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 LOC285556D6RIA3 1793 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 SOGA1O94964 1423 aa0.04□□□□□ -2.4
VPS13A-213ENST00000539950 AFDNP55196 1824 aaKnown RBP0.03□□□□□ -2.4
VPS13A-213ENST00000539950 ERCC6Q03468 1493 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 TRPM7Q96QT4 1865 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 CACNA1EQ15878 2313 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 UNC13BO14795 1591 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 SYNJ1O43426 1573 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 LAMC3Q9Y6N6 1575 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 J3QLW9 94 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 FXYD1O00168 92 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 ARPC5O15511 151 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 APOC1P02654 83 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 SSBP1Q04837 148 aaKnown RBP0.03□□□□□ -2.4
VPS13A-213ENST00000539950 ESPL1Q14674 2120 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 CLLU1Q5K131 121 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 LINC01545Q5VT33 79 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 SPINK6Q6UWN8 80 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 VSTM2AQ8TAG5 236 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 TMEM141Q96I45 108 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 BPESC1Q9GZL8 116 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 COA4Q9NYJ1 87 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 TNCP24821 2201 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 SPAG17Q6Q759 2223 aa0.03□□□□□ -2.4
VPS13A-213ENST00000539950 FHAD1B1AJZ9 1412 aa0.03□□□□□ -2.41
VPS13A-213ENST00000539950 HELZP42694 1942 aaKnown RBP0.03□□□□□ -2.41
VPS13A-213ENST00000539950 SSC5DA1L4H1 1573 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 GVQW2A0A096LPI5 108 aaPredicted RBP0.02□□□□□ -2.41
VPS13A-213ENST00000539950 TRAV17A0A0B4J275 112 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 FAM236AA0A1B0GUQ0 79 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 FAM236BA0A1B0GV22 79 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 RBAKDNA6NC62 111 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 NPC2P61916 151 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 NCS1P62166 190 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 HIST1H1AQ02539 215 aaPredicted RBP0.02□□□□□ -2.41
VPS13A-213ENST00000539950 IQCJQ1A5X6 159 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 Q5VV11 94 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 SCIMPQ6UWF3 145 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 TSKUQ8WUA8 353 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 IFI27L1Q96BM0 104 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 Q96NJ1 140 aa0.02□□□□□ -2.41
VPS13A-213ENST00000539950 BATF3Q9NR55 127 aa0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms