RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110		F8VRH5	84 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	LST1	O00453	97 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	TIMM17B	O60830	172 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	NXPH4	O95158	308 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	RBMY1D	P0C7P1	496 aa	Known RBP	4.09	□□□□□ -1.75
CD44-231	ENST00000531110	RBMY1A1	P0DJD3	496 aa	Known RBP	4.09	□□□□□ -1.75
CD44-231	ENST00000531110	RBMY1C	P0DJD4	496 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	XCL1	P47992	114 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	CCL23	P55773	120 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	ZNF816	Q0VGE8	651 aa	Predicted RBP	4.09	□□□□□ -1.75
CD44-231	ENST00000531110	RBMY1F	Q15415	496 aa	Known RBP	4.09	□□□□□ -1.75
CD44-231	ENST00000531110	SPANXN5	Q5MJ07	72 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	4.09	□□□□□ -1.75
CD44-231	ENST00000531110		Q6ZVQ6	151 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	C11orf45	Q8TAV5	145 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	KLK6	Q92876	244 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	ZNF714	Q96N38	554 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	TTTY10	Q9BZA0	68 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	CXXC4	Q9H2H0	198 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	ZNF355P	Q9NSJ1	428 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	XCL2	Q9UBD3	114 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	CTSZ	Q9UBR2	303 aa		4.09	□□□□□ -1.75
CD44-231	ENST00000531110	IGLV3-32	A0A0A0MS00	114 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110		A0A0J9YX75	114 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	C8orf87	E5RJ46	101 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110		E7EQL1	145 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110		H7C423	109 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110		M0R378	163 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	CD59	P13987	128 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	COX6B1	P14854	86 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	FGF12	P61328	243 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	UBE2B	P63146	152 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	FXYD3	Q14802	87 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	KISS1	Q15726	138 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	ASB16-AS1	Q495Z4	193 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110		Q6ZR03	302 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	ZNF826P	Q6ZT77	177 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	VMO1	Q7Z5L0	202 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	LINC00596	Q86U02	117 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	MAPK1IP1L	Q8NDC0	245 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	NUP37	Q8NFH4	326 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	UBALD1	Q8TB05	177 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	DYNLRB2	Q8TF09	96 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	TOMM6	Q96B49	74 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	TIMM21	Q9BVV7	248 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	MOB4	Q9Y3A3	225 aa		4.08	□□□□□ -1.76
CD44-231	ENST00000531110	LOC100131303	A0A0U1RQF7	123 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110		A0A1W2PQD3	144 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	COX7A2P2	O60397	106 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	SPINK4	O60575	86 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	IGKV1D-16	P01601	117 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	IGHV3-30	P01768	117 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	IGHV3-30-5	P0DP03	117 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	LAGE3	Q14657	143 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	PLGLA	Q15195	96 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	ZNF818P	Q6ZRF7	136 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	LCA10	Q71F78	164 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	VN1R4	Q7Z5H5	301 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	WFDC5	Q8TCV5	224 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	TMEM263	Q8WUH6	116 aa	Known RBP	4.07	□□□□□ -1.76
CD44-231	ENST00000531110	CYSTM1	Q9H1C7	97 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	UBE2D4	Q9Y2X8	147 aa		4.07	□□□□□ -1.76
CD44-231	ENST00000531110	HEATR1	Q9H583	2144 aa	Known RBP	4.07	□□□□□ -1.76
CD44-231	ENST00000531110	IGLV7-46	A0A075B6I9	117 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	TMSB15B	A0A087X1C1	80 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	TRGV8	A0A0C4DH27	118 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110		J3QT63	122 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	FXYD4	P59646	89 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	CXCL6	P80162	114 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	KIAA0087	Q14695	138 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	MRPL51	Q4U2R6	128 aa	Known RBP	4.06	□□□□□ -1.76
CD44-231	ENST00000531110	LYPD5	Q6UWN5	251 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	ATP11AUN	Q6ZP68	121 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	COX8C	Q7Z4L0	72 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	CD177	Q8N6Q3	437 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	RNASE6	Q93091	150 aa	Known RBP	4.06	□□□□□ -1.76
CD44-231	ENST00000531110	ESM1	Q9NQ30	184 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	LINC00588	Q9Y4M8	146 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	MYO9B	Q13459	2157 aa		4.06	□□□□□ -1.76
CD44-231	ENST00000531110	TANC2	Q9HCD6	1990 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	ARID1A	O14497	2285 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	TRAV41	A0A0B4J266	112 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110		A0A0J9YY99	117 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	TMEM223	A0PJW6	202 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	SDHAF1	A6NFY7	115 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	IQCF6	A8MYZ5	107 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110		H3BP45	60 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110		M0R135	149 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	SH2D1A	O60880	128 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	IGKV1-5	P01602	117 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	IGLV3-27	P01718	113 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	IGHV4-34	P06331	123 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	CISD3	P0C7P0	127 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	RNASE2	P10153	161 aa	Known RBP	4.05	□□□□□ -1.76
CD44-231	ENST00000531110	ZNF22	P17026	224 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-231	ENST00000531110	TFF3	Q07654	80 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	RHOH	Q15669	191 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	ESRG	Q1W209	222 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	ZNF542P	Q5EBM4	170 aa		4.05	□□□□□ -1.76
CD44-231	ENST00000531110	SPTSSA	Q969W0	71 aa		4.05	□□□□□ -1.76

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