RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR4C46A6NHA9 309 aa15.32■□□□□ 0.04
VPS28-209ENST00000528142 NPYP01303 97 aa15.32■□□□□ 0.04
VPS28-209ENST00000528142 KRTAP10-3P60369 221 aa15.32■□□□□ 0.04
VPS28-209ENST00000528142 SPRY2O43597 315 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 GAS8-AS1O95177 125 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 NCR2O95944 276 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 KRTDAPP60985 99 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 PMCHL1Q16048 86 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 SETD2Q9BYW2 2564 aaPredicted RBP15.31■□□□□ 0.04
VPS28-209ENST00000528142 ZNF124Q15973 351 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 SMIM15Q7Z3B0 74 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 Q8N976 141 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 PRSS3P2Q8NHM4 247 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 PHLDA3Q9Y5J5 127 aa15.31■□□□□ 0.04
VPS28-209ENST00000528142 C3orf79P0CE67 100 aa15.3■□□□□ 0.04
VPS28-209ENST00000528142 IFI27P40305 119 aaPredicted RBP15.3■□□□□ 0.04
VPS28-209ENST00000528142 RBMY1BA6NDE4 496 aaKnown RBP15.29■□□□□ 0.04
VPS28-209ENST00000528142 RBMY1EA6NEQ0 496 aaKnown RBP15.29■□□□□ 0.04
VPS28-209ENST00000528142 M0R381 172 aa15.29■□□□□ 0.04
VPS28-209ENST00000528142 NXPH4O95158 308 aa15.29■□□□□ 0.04
VPS28-209ENST00000528142 RBMY1DP0C7P1 496 aaKnown RBP15.29■□□□□ 0.04
VPS28-209ENST00000528142 AP5S1Q9NUS5 200 aa15.29■□□□□ 0.04
VPS28-209ENST00000528142 LAMTOR2Q9Y2Q5 125 aa15.29■□□□□ 0.04
VPS28-209ENST00000528142 MAST4O15021 2626 aa15.29■□□□□ 0.04
VPS28-209ENST00000528142 C2CD3Q4AC94 2353 aa15.28■□□□□ 0.04
VPS28-209ENST00000528142 LOC389332A0A1B0GUA5 103 aa15.28■□□□□ 0.04
VPS28-209ENST00000528142 CRXO43186 299 aaPredicted RBP15.28■□□□□ 0.04
VPS28-209ENST00000528142 CD7P09564 240 aa15.28■□□□□ 0.04
VPS28-209ENST00000528142 NSUN5P1Q3KNT7 163 aa15.28■□□□□ 0.04
VPS28-209ENST00000528142 FA2HQ7L5A8 372 aa15.28■□□□□ 0.04
VPS28-209ENST00000528142 IGHV1OR15-1A0A075B7D0 117 aa15.27■□□□□ 0.03
VPS28-209ENST00000528142 IGHV3-16A0A0C4DH30 117 aa15.27■□□□□ 0.03
VPS28-209ENST00000528142 TNFRSF6BO95407 300 aa15.27■□□□□ 0.03
VPS28-209ENST00000528142 GATA1P15976 413 aaPredicted RBP15.27■□□□□ 0.03
VPS28-209ENST00000528142 ODF3L2Q3SX64 289 aa15.27■□□□□ 0.03
VPS28-209ENST00000528142 NDUFA11Q86Y39 141 aa15.27■□□□□ 0.03
VPS28-209ENST00000528142 ZNF664Q8N3J9 261 aa15.27■□□□□ 0.03
VPS28-209ENST00000528142 RBMY1A1P0DJD3 496 aaKnown RBP15.26■□□□□ 0.03
VPS28-209ENST00000528142 RBMY1CP0DJD4 496 aa15.26■□□□□ 0.03
VPS28-209ENST00000528142 FXYD7P58549 80 aa15.26■□□□□ 0.03
VPS28-209ENST00000528142 RBMY1FQ15415 496 aaKnown RBP15.26■□□□□ 0.03
VPS28-209ENST00000528142 C9orf85Q96MD7 179 aa15.26■□□□□ 0.03
VPS28-209ENST00000528142 AGRNO00468 2067 aa15.26■□□□□ 0.03
VPS28-209ENST00000528142 TEX43Q6ZNM6 134 aa15.25■□□□□ 0.03
VPS28-209ENST00000528142 Q8N1Y9 231 aa15.25■□□□□ 0.03
VPS28-209ENST00000528142 SORL1Q92673 2214 aa15.25■□□□□ 0.03
VPS28-209ENST00000528142 PKIAP61925 76 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 NRACQ8N912 160 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 CLUHP3Q96NS8 147 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 MAP1LC3AQ9H492 121 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 MDFICQ9P1T7 246 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 LEPROTL1O95214 131 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 LINC00173Q6ZV60 143 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 C14orf178Q8N769 122 aaPredicted RBP15.24■□□□□ 0.03
VPS28-209ENST00000528142 OR2K2Q8NGT1 345 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 MRAP2Q96G30 205 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 DPH3P1Q9H4G8 78 aa15.24■□□□□ 0.03
VPS28-209ENST00000528142 TRAV26-2A0A0B4J265 109 aa15.23■□□□□ 0.03
VPS28-209ENST00000528142 LINC01546A6NGU7 62 aa15.23■□□□□ 0.03
VPS28-209ENST00000528142 SAP30O75446 220 aa15.23■□□□□ 0.03
VPS28-209ENST00000528142 BTF3P20290 206 aaKnown RBP15.23■□□□□ 0.03
VPS28-209ENST00000528142 A0A096LNJ9 63 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 PRSS47A8MTI9 375 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 IGLV1-51P01701 117 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 DEFB125Q8N687 156 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 PRO1933Q9H354 126 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 KIF25-AS1Q9Y6Z4 181 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 JMJD1CQ15652 2540 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 LINC00587B1AMM8 73 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 POM121L12Q8N7R1 296 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 AP1S3Q96PC3 154 aa15.22■□□□□ 0.03
VPS28-209ENST00000528142 LINC00315P59091 139 aa15.2■□□□□ 0.02
VPS28-209ENST00000528142 TMEM70Q9BUB7 260 aa15.2■□□□□ 0.02
VPS28-209ENST00000528142 NXT2Q9NPJ8 142 aaKnown RBP15.2■□□□□ 0.02
VPS28-209ENST00000528142 IGLV2-18A0A075B6J9 118 aa15.2■□□□□ 0.02
VPS28-209ENST00000528142 HSPB8Q9UJY1 196 aa15.2■□□□□ 0.02
VPS28-209ENST00000528142 TRGV11A0A075B6L2 103 aa15.19■□□□□ 0.02
VPS28-209ENST00000528142 OR11H12B2RN74 326 aa15.19■□□□□ 0.02
VPS28-209ENST00000528142 TSTD3H0UI37 97 aa15.19■□□□□ 0.02
VPS28-209ENST00000528142 SPATA12Q7Z6I5 190 aa15.19■□□□□ 0.02
VPS28-209ENST00000528142 MUC4Q99102 2169 aa15.18■□□□□ 0.02
VPS28-209ENST00000528142 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.18■□□□□ 0.02
VPS28-209ENST00000528142 ZNF747Q9BV97 191 aa15.18■□□□□ 0.02
VPS28-209ENST00000528142 SYS1-DBNDD2H3BUS1 97 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 Q8N8P6 123 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 RASL10AQ92737 203 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 JPT2Q9H910 190 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 KIR2DL5BA0A0G2JN68 375 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 KIR2DL5BA0A0G2JPC4 375 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 CBY3A6NI87 242 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 CMC4P56277 68 aaPredicted RBP15.17■□□□□ 0.02
VPS28-209ENST00000528142 TRPT1Q86TN4 253 aaKnown RBP15.17■□□□□ 0.02
VPS28-209ENST00000528142 KIR2DL5AQ8N109 375 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 LINC00482Q8N8I6 264 aa15.17■□□□□ 0.02
VPS28-209ENST00000528142 BEAN1Q3B7T3 259 aa15.16■□□□□ 0.02
VPS28-209ENST00000528142 HBDP02042 147 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 MGPP08493 103 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 STHQ8IWL8 128 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 SYT8Q8NBV8 401 aa15.15■□□□□ 0.02
VPS28-209ENST00000528142 FAM110AQ9BQ89 295 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms