RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816		K7ERJ3	54 aa		11.85	□□□□□ -0.51
BRD9-208	ENST00000489816	FAM74A4	Q5TZK3	123 aa		11.85	□□□□□ -0.51
BRD9-208	ENST00000489816	DPF1	Q92782	380 aa		11.85	□□□□□ -0.51
BRD9-208	ENST00000489816	TRAV21	A0A0B4J279	112 aa		11.84	□□□□□ -0.51
BRD9-208	ENST00000489816	ASIP	P42127	132 aa		11.84	□□□□□ -0.51
BRD9-208	ENST00000489816	SOCS3	O14543	225 aa		11.84	□□□□□ -0.51
BRD9-208	ENST00000489816	LINC00477	Q96M19	166 aa		11.84	□□□□□ -0.51
BRD9-208	ENST00000489816	DAZ1	Q9NQZ3	744 aa	Known RBP	11.84	□□□□□ -0.51
BRD9-208	ENST00000489816		F5H697	171 aa		11.83	□□□□□ -0.51
BRD9-208	ENST00000489816	SRSF2	Q01130	221 aa	Known RBP	11.83	□□□□□ -0.51
BRD9-208	ENST00000489816	AP1S3	Q96PC3	154 aa		11.83	□□□□□ -0.51
BRD9-208	ENST00000489816	PSMG4	Q5JS54	123 aa		11.83	□□□□□ -0.52
BRD9-208	ENST00000489816	RASL10A	Q92737	203 aa		11.83	□□□□□ -0.52
BRD9-208	ENST00000489816	JMJD8	Q96S16	334 aa		11.83	□□□□□ -0.52
BRD9-208	ENST00000489816		B4DSR2	109 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	KLK9	Q2XQG4	91 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	MAPKAPK5-AS1	Q8N8E1	139 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	USMG5	Q96IX5	58 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	KLK9	Q9UKQ9	250 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	CD7	P09564	240 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	SYNJ2BP	P57105	145 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	PPP1R14D	Q9NXH3	145 aa		11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	PEF1	Q9UBV8	284 aa	Known RBP	11.82	□□□□□ -0.52
BRD9-208	ENST00000489816	DPM2	O94777	84 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	RNASE3	P12724	160 aa	Known RBP	11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	FXYD2	P54710	66 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.81	□□□□□ -0.52	8e-7	■■■■□ 23.2
BRD9-208	ENST00000489816	ADAMTSL5	Q6ZMM2	481 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	MRPL53	Q96EL3	112 aa	Known RBP	11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	SMPX	Q9UHP9	88 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	SUMO2	P61956	95 aa	Known RBP	11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	SMIM2	Q9BVW6	85 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	OVOL1	O14753	267 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	PRM2	P04554	102 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	OR1N2	Q8NGR9	330 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	DUX3	Q96PT4	197 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	SCGB3A1	Q96QR1	104 aa		11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	BEX4	Q9NWD9	120 aa	Predicted RBP	11.81	□□□□□ -0.52
BRD9-208	ENST00000489816	GAGE10	A6NGK3	116 aa		11.8	□□□□□ -0.52
BRD9-208	ENST00000489816	RNF223	E7ERA6	249 aa		11.8	□□□□□ -0.52
BRD9-208	ENST00000489816	DEFB136	Q30KP8	78 aa		11.8	□□□□□ -0.52
BRD9-208	ENST00000489816		A0A0G2JLM5	398 aa		11.8	□□□□□ -0.52
BRD9-208	ENST00000489816	NOTCH2	Q04721	2471 aa		11.8	□□□□□ -0.52
BRD9-208	ENST00000489816	APC	P25054	2843 aa		11.8	□□□□□ -0.52
BRD9-208	ENST00000489816	FAM159A	Q6UWV7	190 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	TRBV25-1	A0A075B6N4	114 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	GAGE12B	A1L429	117 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	IGLV1-40	P01703	118 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	KRTAP10-9	P60411	292 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	SPINK13	Q1W4C9	94 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	CSTL1	Q9H114	145 aa		11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	FLNA	P21333	2647 aa	Known RBP	11.79	□□□□□ -0.52
BRD9-208	ENST00000489816	HSD52	Q0P140	79 aa		11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	DPH3P1	Q9H4G8	78 aa		11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	NDUFS8	O00217	210 aa		11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	CHAC1	Q9BUX1	264 aa		11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	NHP2	Q9NX24	153 aa	Known RBP	11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	MDFIC	Q9P1T7	246 aa		11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	NBPF19	A0A087WUL8	3843 aa		11.78	□□□□□ -0.52
BRD9-208	ENST00000489816	ATP5L	O75964	103 aa		11.77	□□□□□ -0.52
BRD9-208	ENST00000489816	CRIP2	P52943	208 aa	Predicted RBP	11.77	□□□□□ -0.52
BRD9-208	ENST00000489816	SEC11A	P67812	179 aa		11.77	□□□□□ -0.52
BRD9-208	ENST00000489816	C18orf65	Q6ZTR6	163 aa		11.77	□□□□□ -0.52
BRD9-208	ENST00000489816		A6NDN8	102 aa		11.77	□□□□□ -0.53
BRD9-208	ENST00000489816	OR9G4	Q8NGQ1	327 aa		11.77	□□□□□ -0.53
BRD9-208	ENST00000489816	DCANP1	Q8TF63	244 aa		11.77	□□□□□ -0.53
BRD9-208	ENST00000489816	CST9L	Q9H4G1	147 aa		11.77	□□□□□ -0.53
BRD9-208	ENST00000489816	ITPR3	Q14573	2671 aa		11.77	□□□□□ -0.53
BRD9-208	ENST00000489816	RPL39	P62891	51 aa	Known RBP	11.76	□□□□□ -0.53
BRD9-208	ENST00000489816	C2orf66	Q6UXQ4	117 aa		11.76	□□□□□ -0.53
BRD9-208	ENST00000489816	ZNF256	Q9Y2P7	627 aa	Predicted RBP	11.76	□□□□□ -0.53
BRD9-208	ENST00000489816	RBX1	P62877	108 aa		11.76	□□□□□ -0.53
BRD9-208	ENST00000489816	KHDC1L	Q5JSQ8	128 aa		11.76	□□□□□ -0.53
BRD9-208	ENST00000489816	SAP30	O75446	220 aa		11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	DUSP14	O95147	198 aa	Known RBP	11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	PCP4	P48539	62 aa		11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	ZMAT4	Q9H898	229 aa		11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	IGHV4-4	A0A075B6R2	117 aa		11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	BBC3	Q96PG8	261 aa	Predicted RBP	11.75	□□□□□ -0.53
BRD9-208	ENST00000489816		A0A087WX48	190 aa		11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	PSMB8	P28062	276 aa		11.75	□□□□□ -0.53
BRD9-208	ENST00000489816	IGHV3-73	A0A0B4J1V6	119 aa		11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	MRAP2	Q96G30	205 aa		11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	LENEP	Q9Y5L5	61 aa		11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	C9orf118	A6NHY6	69 aa		11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	SFTA2	Q6UW10	78 aa		11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	C11orf44	Q8N8P7	122 aa		11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.74	□□□□□ -0.53
BRD9-208	ENST00000489816	IGHV4OR15-8	A0A075B7B6	117 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816		A0A087WW49	117 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	CD300E	Q496F6	205 aa	Predicted RBP	11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	LINC01546	A6NGU7	62 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	MTURN	Q8N3F0	131 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	KLHL30-AS1	Q8NEE0	82 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	VPS25	Q9BRG1	176 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	CBY1	Q9Y3M2	126 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	CFHR3	Q02985	330 aa		11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	OPRPN	Q99935	248 aa	Predicted RBP	11.73	□□□□□ -0.53
BRD9-208	ENST00000489816	HOXA3	O43365	443 aa	Predicted RBP	11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms