RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SHISA2Q6UWI4 295 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 HIST3H2BBQ8N257 126 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 SPATA3Q8NHX4 192 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 TMEM158Q8WZ71 300 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 MSRB1Q9NZV6 116 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 TP53TG3Q9ULZ0 132 aa6.89□□□□□ -1.31
VPS52-216ENST00000471309 GTSCR1Q86UQ5 136 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 AMN1Q8IY45 258 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 Q8N1Y9 231 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 C18orf32Q8TCD1 76 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 C9orf85Q96MD7 179 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 PHLDA3Q9Y5J5 127 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 U3KQK5 164 aa6.88□□□□□ -1.31
VPS52-216ENST00000471309 IFITM10A6NMD0 228 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 M0R381 172 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 ESDP10768 282 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 SSTP61278 116 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 PRR31Q5SQ13 230 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 MORN3Q6PF18 240 aaPredicted RBP6.87□□□□□ -1.31
VPS52-216ENST00000471309 C12orf54Q6X4T0 127 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 SMIM15Q7Z3B0 74 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 BAGE3Q86Y29 109 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 TMEM256Q8N2U0 113 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 C3orf56Q8N813 242 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 AP1S3Q96PC3 154 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 WFDC10AQ9H1F0 79 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 TIMM8BQ9Y5J9 83 aaPredicted RBP6.87□□□□□ -1.31
VPS52-216ENST00000471309 JMJD1CQ15652 2540 aa6.87□□□□□ -1.31
VPS52-216ENST00000471309 CBY3A6NI87 242 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 SERF1AO75920 110 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 PPBPP02775 128 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 RAB4AP20338 218 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 S100A2P29034 98 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 LINC00310P59036 64 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 MRPL51Q4U2R6 128 aaKnown RBP6.86□□□□□ -1.31
VPS52-216ENST00000471309 ORMDL3Q8N138 153 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 RNF185Q96GF1 192 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 HIST1H2BLQ99880 126 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 C1QTNF4Q9BXJ3 329 aa6.86□□□□□ -1.31
VPS52-216ENST00000471309 AGRNO00468 2067 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 D6R8Y8 96 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 IGLL1P15814 213 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 EVI2AP22794 236 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 ZNF415Q09FC8 603 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 IQCJQ1A5X6 159 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 PDZD11Q5EBL8 140 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 SYT8Q8NBV8 401 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 TMEM18Q96B42 140 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 RCHY1Q96PM5 261 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 MDFICQ9P1T7 246 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 XCL2Q9UBD3 114 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 LAMTOR2Q9Y2Q5 125 aa6.85□□□□□ -1.31
VPS52-216ENST00000471309 NUPR1O60356 82 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 CKS2P33552 79 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 AKR1D1P51857 326 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 PIK3CD-AS1Q5SR53 167 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 C1orf158Q8N1D5 194 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 DEFB125Q8N687 156 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 PACRGQ96M98 296 aaPredicted RBP6.84□□□□□ -1.31
VPS52-216ENST00000471309 PRELID3AQ96N28 172 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 LINC01587Q99440 93 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 DPH3P1Q9H4G8 78 aa6.84□□□□□ -1.31
VPS52-216ENST00000471309 WNK1Q9H4A3 2382 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 GIG44P09565 113 aaPredicted RBP6.83□□□□□ -1.32
VPS52-216ENST00000471309 FABP4P15090 132 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 POM121L12Q8N7R1 296 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 C11orf72Q8NBR9 251 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 PTH2Q96A98 100 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 CHCHD1Q96BP2 118 aaKnown RBP6.83□□□□□ -1.32
VPS52-216ENST00000471309 MRAP2Q96G30 205 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 URB1-AS1Q96HZ7 61 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 TMEM208Q9BTX3 173 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 GOLT1BQ9Y3E0 138 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 KIF25-AS1Q9Y6Z4 181 aa6.83□□□□□ -1.32
VPS52-216ENST00000471309 SPRY2O43597 315 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 NCR2O95944 276 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 HTN1P15515 57 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 RPL35AP18077 110 aaKnown RBP6.82□□□□□ -1.32
VPS52-216ENST00000471309 RNASEKQ6P5S7 137 aaKnown RBP6.82□□□□□ -1.32
VPS52-216ENST00000471309 C14orf178Q8N769 122 aaPredicted RBP6.82□□□□□ -1.32
VPS52-216ENST00000471309 CSNK1G2-AS1Q8NCQ2 148 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 IL17DQ8TAD2 202 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 MDFIQ99750 246 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 NDUFAF3Q9BU61 184 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 GSN-AS1Q9NRJ2 163 aa6.82□□□□□ -1.32
VPS52-216ENST00000471309 COL6A5A8TX70 2615 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 SMKR1H3BMG3 65 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 M0R2P5 195 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 HSBP1O75506 76 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 NPYP01303 97 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 SMIM6P0DI80 62 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 SMIM17P0DL12 118 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 LINC00315P59091 139 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 ZNF876PQ49A33 203 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 NIT1Q86X76 327 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 OR10D4PQ8NGN7 298 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 RNASE8Q8TDE3 154 aaKnown RBP6.81□□□□□ -1.32
VPS52-216ENST00000471309 TMEM263Q8WUH6 116 aaKnown RBP6.81□□□□□ -1.32
VPS52-216ENST00000471309 SPXQ9BT56 116 aa6.81□□□□□ -1.32
VPS52-216ENST00000471309 SAMD10Q9BYL1 202 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms