RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 NHLRC2Q8NBF2 726 aa13.01□□□□□ -0.33
COL9A3-203ENST00000462700 FAT2Q9NYQ8 4349 aa13.01□□□□□ -0.33
COL9A3-203ENST00000462700 NBDYA0A0U1RRE5 68 aa13□□□□□ -0.33
COL9A3-203ENST00000462700 M0R036 132 aa13□□□□□ -0.33
COL9A3-203ENST00000462700 RTL8CO15255 209 aa13□□□□□ -0.33
COL9A3-203ENST00000462700 RS1O15537 224 aa13□□□□□ -0.33
COL9A3-203ENST00000462700 MRPL23Q16540 153 aaKnown RBP13□□□□□ -0.33
COL9A3-203ENST00000462700 CFAP126Q5VTH2 177 aa13□□□□□ -0.33
COL9A3-203ENST00000462700 Q9H8V8 135 aa13□□□□□ -0.33
COL9A3-203ENST00000462700 DNAH17Q9UFH2 4485 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 K7EQD1 137 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 LINC01559Q495D7 138 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 DNLZQ5SXM8 178 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 BAGE2Q86Y30 109 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 C11orf52Q96A22 123 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 TXNDC17Q9BRA2 123 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 MLST8Q9BVC4 326 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 IL36BQ9NZH7 164 aa12.99□□□□□ -0.33
COL9A3-203ENST00000462700 CIDEAO60543 219 aa12.98□□□□□ -0.33
COL9A3-203ENST00000462700 GYPEP15421 78 aa12.98□□□□□ -0.33
COL9A3-203ENST00000462700 GATA1P15976 413 aaPredicted RBP12.98□□□□□ -0.33
COL9A3-203ENST00000462700 PCNPQ8WW12 178 aaKnown RBP12.98□□□□□ -0.33
COL9A3-203ENST00000462700 GRIFINA4D1Z8 144 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 H3BVH4 76 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 IFNA1P01562 189 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 SRIP30626 198 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 RPL35P42766 123 aaKnown RBP12.97□□□□□ -0.33
COL9A3-203ENST00000462700 PIK3CD-AS1Q5SR53 167 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 C1orf134Q5TEV5 83 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 NEGR1Q7Z3B1 354 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 ZNF575Q86XF7 245 aa12.97□□□□□ -0.33
COL9A3-203ENST00000462700 TMSB15BA0A087X1C1 80 aa12.96□□□□□ -0.33
COL9A3-203ENST00000462700 ARMS2P0C7Q2 107 aa12.96□□□□□ -0.33
COL9A3-203ENST00000462700 MEF2BQ02080 365 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-203ENST00000462700 SOHLH1Q5JUK2 328 aa12.96□□□□□ -0.33
COL9A3-203ENST00000462700 ALKAL2Q6UX46 152 aa12.96□□□□□ -0.33
COL9A3-203ENST00000462700 DERL1Q9BUN8 251 aa12.96□□□□□ -0.33
COL9A3-203ENST00000462700 HECTD4Q9Y4D8 3996 aa12.96□□□□□ -0.33
COL9A3-203ENST00000462700 IGHV3-73A0A0B4J1V6 119 aa12.95□□□□□ -0.34
COL9A3-203ENST00000462700 LOC100131303A0A0U1RQF7 123 aa12.95□□□□□ -0.34
COL9A3-203ENST00000462700 PRSS29PA6NIE9 313 aa12.95□□□□□ -0.34
COL9A3-203ENST00000462700 BCL2P10415 239 aa12.95□□□□□ -0.34
COL9A3-203ENST00000462700 NKX2-5P52952 324 aaPredicted RBP12.95□□□□□ -0.34
COL9A3-203ENST00000462700 LYPD5Q6UWN5 251 aa12.95□□□□□ -0.34
COL9A3-203ENST00000462700 A8MWV9 139 aa12.94□□□□□ -0.34
COL9A3-203ENST00000462700 PDE6DO43924 150 aa12.94□□□□□ -0.34
COL9A3-203ENST00000462700 TTC32Q5I0X7 151 aa12.94□□□□□ -0.34
COL9A3-203ENST00000462700 SLC25A29Q8N8R3 303 aa12.94□□□□□ -0.34
COL9A3-203ENST00000462700 PARLQ9H300 379 aa12.94□□□□□ -0.34
COL9A3-203ENST00000462700 SCRT2Q9NQ03 307 aa12.94□□□□□ -0.34
COL9A3-203ENST00000462700 TRBV6-4A0A1B0GX49 114 aa12.93□□□□□ -0.34
COL9A3-203ENST00000462700 DMRTA1Q5VZB9 504 aa12.93□□□□□ -0.34
COL9A3-203ENST00000462700 PRR27Q6MZM9 219 aa12.93□□□□□ -0.34
COL9A3-203ENST00000462700 SYT8Q8NBV8 401 aa12.93□□□□□ -0.34
COL9A3-203ENST00000462700 KRTAP1-5Q9BYS1 174 aa12.93□□□□□ -0.34
COL9A3-203ENST00000462700 VAX2Q9UIW0 290 aa12.93□□□□□ -0.34
COL9A3-203ENST00000462700 NXPH4O95158 308 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 MGST1P10620 155 aaKnown RBP12.92□□□□□ -0.34
COL9A3-203ENST00000462700 RPL19P84098 196 aaKnown RBP12.92□□□□□ -0.34
COL9A3-203ENST00000462700 RHOHQ15669 191 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 CENPWQ5EE01 88 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 ZFP2Q6ZN57 461 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 C6orf223Q8N319 242 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 PRADC1Q9BSG0 188 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 JPT2Q9H910 190 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 PHLDA3Q9Y5J5 127 aa12.92□□□□□ -0.34
COL9A3-203ENST00000462700 A0A1B0GVY2 172 aa12.91□□□□□ -0.34
COL9A3-203ENST00000462700 A0A1W2PPQ1 181 aa12.91□□□□□ -0.34
COL9A3-203ENST00000462700 SIVA1O15304 175 aa12.91□□□□□ -0.34
COL9A3-203ENST00000462700 CXCL1P09341 107 aa12.91□□□□□ -0.34
COL9A3-203ENST00000462700 TAGLN2P37802 199 aaKnown RBP12.91□□□□□ -0.34
COL9A3-203ENST00000462700 BLOC1S1P78537 153 aa12.91□□□□□ -0.34
COL9A3-203ENST00000462700 BOLA1Q9Y3E2 137 aa12.91□□□□□ -0.34
COL9A3-203ENST00000462700 IGLV2-8P01709 118 aa12.9□□□□□ -0.34
COL9A3-203ENST00000462700 MED14OSP0DP75 135 aa12.9□□□□□ -0.34
COL9A3-203ENST00000462700 UFSP1Q6NVU6 142 aa12.9□□□□□ -0.34
COL9A3-203ENST00000462700 SH2D6Q7Z4S9 175 aa12.9□□□□□ -0.34
COL9A3-203ENST00000462700 SAMD10Q9BYL1 202 aa12.9□□□□□ -0.34
COL9A3-203ENST00000462700 MED9Q9NWA0 146 aa12.9□□□□□ -0.34
COL9A3-203ENST00000462700 RAB19A4D1S5 217 aa12.89□□□□□ -0.35
COL9A3-203ENST00000462700 M0R381 172 aa12.89□□□□□ -0.35
COL9A3-203ENST00000462700 ZFP82Q8N141 532 aa12.89□□□□□ -0.35
COL9A3-203ENST00000462700 SMIM12Q96EX1 92 aa12.89□□□□□ -0.35
COL9A3-203ENST00000462700 GNG4P50150 75 aa12.88□□□□□ -0.35
COL9A3-203ENST00000462700 Q6ZSN1 163 aa12.88□□□□□ -0.35
COL9A3-203ENST00000462700 LYPD6BQ8NI32 183 aa12.88□□□□□ -0.35
COL9A3-203ENST00000462700 SFRP2Q96HF1 295 aa12.88□□□□□ -0.35
COL9A3-203ENST00000462700 TRBV20OR9-2A0A075B6H5 130 aa12.87□□□□□ -0.35
COL9A3-203ENST00000462700 RHODO00212 210 aa12.87□□□□□ -0.35
COL9A3-203ENST00000462700 TIRAPP58753 221 aa12.87□□□□□ -0.35
COL9A3-203ENST00000462700 PKD1P98161 4303 aa12.86□□□□□ -0.35
COL9A3-203ENST00000462700 SNAI2O43623 268 aa12.86□□□□□ -0.35
COL9A3-203ENST00000462700 FAM74A4Q5TZK3 123 aa12.86□□□□□ -0.35
COL9A3-203ENST00000462700 WFDC10BQ8IUB3 73 aa12.86□□□□□ -0.35
COL9A3-203ENST00000462700 SSBP4Q9BWG4 385 aaPredicted RBP12.86□□□□□ -0.35
COL9A3-203ENST00000462700 A0A087WWL8 130 aa12.85□□□□□ -0.35
COL9A3-203ENST00000462700 CRYGDP07320 174 aa12.85□□□□□ -0.35
COL9A3-203ENST00000462700 BTF3P20290 206 aaKnown RBP12.85□□□□□ -0.35
COL9A3-203ENST00000462700 OR10AG1Q8NH19 301 aa12.85□□□□□ -0.35
COL9A3-203ENST00000462700 DAZAP1Q96EP5 407 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms