RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 IGSF10Q6WRI0 2623 aa8.9□□□□□ -0.98
CD44-209ENST00000433892 MYO18BQ8IUG5 2567 aa8.9□□□□□ -0.99
CD44-209ENST00000433892 BRI3O95415 125 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 RNASE3P12724 160 aaKnown RBP8.89□□□□□ -0.99
CD44-209ENST00000433892 PLNP26678 52 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 ORMDL2Q53FV1 153 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 WFDC12Q8WWY7 111 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 PIEZO1Q92508 2521 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 AVPP01185 164 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 IGLV1-40P01703 118 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 MSMBP08118 114 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 TMEM95Q3KNT9 176 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 TOMM6Q96B49 74 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 C20orf78Q9BR46 151 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 SPCS1Q9Y6A9 102 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 DOPEY1Q5JWR5 2465 aa8.89□□□□□ -0.99
CD44-209ENST00000433892 RNF223E7ERA6 249 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 F8VRH5 84 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 H7C1H1 209 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 SAP30O75446 220 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 SAMD5Q5TGI4 173 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 CEND1Q8N111 149 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 NHP2Q9NX24 153 aaKnown RBP8.88□□□□□ -0.99
CD44-209ENST00000433892 USP9YO00507 2555 aaPredicted RBP8.88□□□□□ -0.99
CD44-209ENST00000433892 NDUFS8O00217 210 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 APRG1Q8IVJ8 170 aa8.88□□□□□ -0.99
CD44-209ENST00000433892 CHTOPQ9Y3Y2 248 aaKnown RBP8.88□□□□□ -0.99
CD44-209ENST00000433892 MUC4Q99102 2169 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 TRAV12-1A0A0B4J245 112 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 K7ERU9 68 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 FABP2P12104 132 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 HLA-DRB4P13762 266 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 NEGR1Q7Z3B1 354 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 DEFB104AQ8WTQ1 72 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 TM2D2Q9BX73 214 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 HLA-DRB4X5D2U9 266 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 MED14OSP0DP75 135 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 C2orf66Q6UXQ4 117 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 NEXN-AS1Q8NBZ9 246 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 CSTL1Q9H114 145 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 MXRA5Q9NR99 2828 aa8.87□□□□□ -0.99
CD44-209ENST00000433892 SLC25A16P16260 332 aa8.86□□□□□ -0.99
CD44-209ENST00000433892 CFHR3Q02985 330 aa8.86□□□□□ -0.99
CD44-209ENST00000433892 PHLDA1Q8WV24 401 aaPredicted RBP8.86□□□□□ -0.99
CD44-209ENST00000433892 JPT2Q9H910 190 aa8.86□□□□□ -0.99
CD44-209ENST00000433892 AGRNO00468 2067 aa8.86□□□□□ -0.99
CD44-209ENST00000433892 POLQO75417 2590 aa8.86□□□□□ -0.99
CD44-209ENST00000433892 BAALCQ8WXS3 180 aa8.85□□□□□ -0.99
CD44-209ENST00000433892 TRBV7-9A0A0J9YWB2 115 aa8.85□□□□□ -0.99
CD44-209ENST00000433892 KLLNB2CW77 178 aa8.85□□□□□ -0.99
CD44-209ENST00000433892 C10orf99Q6UWK7 81 aa8.85□□□□□ -0.99
CD44-209ENST00000433892 FAM159AQ6UWV7 190 aa8.85□□□□□ -0.99
CD44-209ENST00000433892 DCANP1Q8TF63 244 aa8.85□□□□□ -0.99
CD44-209ENST00000433892 TRAV12-3A0A0B4J271 114 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 OR11H12B2RN74 326 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 LINC00315P59091 139 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 OR11H1Q8NG94 326 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 OR5A1Q8NGJ0 315 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 OR11H2Q8NH07 326 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 NRGNQ92686 78 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 HIST1H4GQ99525 98 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 KIF25-AS1Q9Y6Z4 181 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 A0A087WWL8 130 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 PRSS29PA6NIE9 313 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 IGHV4-59P01825 116 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 CD7P09564 240 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 ID1P41134 155 aa8.84□□□□□ -0.99
CD44-209ENST00000433892 DOPEY2Q9Y3R5 2298 aa8.84□□□□□ -1
CD44-209ENST00000433892 CACNA1AO00555 2505 aa8.84□□□□□ -1
CD44-209ENST00000433892 B4DSR2 109 aa8.83□□□□□ -1
CD44-209ENST00000433892 K7EMT4 169 aa8.83□□□□□ -1
CD44-209ENST00000433892 NXPH4O95158 308 aa8.83□□□□□ -1
CD44-209ENST00000433892 IGKV3-20P01619 116 aa8.83□□□□□ -1
CD44-209ENST00000433892 CREBBPQ92793 2442 aa8.83□□□□□ -1
CD44-209ENST00000433892 MYMXA0A1B0GTQ4 84 aa8.83□□□□□ -1
CD44-209ENST00000433892 DUSP14O95147 198 aaKnown RBP8.83□□□□□ -1
CD44-209ENST00000433892 PPP1R17O96001 155 aa8.83□□□□□ -1
CD44-209ENST00000433892 ZNF688P0C7X2 276 aa8.83□□□□□ -1
CD44-209ENST00000433892 PSMB8P28062 276 aa8.83□□□□□ -1
CD44-209ENST00000433892 FBN2P35556 2912 aa8.83□□□□□ -1
CD44-209ENST00000433892 F5H697 171 aa8.82□□□□□ -1
CD44-209ENST00000433892 TAL2Q16559 108 aa8.82□□□□□ -1
CD44-209ENST00000433892 SUMO4Q6EEV6 95 aa8.82□□□□□ -1
CD44-209ENST00000433892 POM121L12Q8N7R1 296 aa8.82□□□□□ -1
CD44-209ENST00000433892 TRAV12-2A0A075B6T6 113 aa8.82□□□□□ -1
CD44-209ENST00000433892 DEFB112Q30KQ8 113 aa8.82□□□□□ -1
CD44-209ENST00000433892 C12orf74Q32Q52 190 aa8.82□□□□□ -1
CD44-209ENST00000433892 PRADC1Q9BSG0 188 aa8.82□□□□□ -1
CD44-209ENST00000433892 SORL1Q92673 2214 aa8.82□□□□□ -1
CD44-209ENST00000433892 ANKRD17O75179 2603 aaKnown RBP8.81□□□□□ -1
CD44-209ENST00000433892 IGHV4OR15-8A0A075B7B6 117 aa8.81□□□□□ -1
CD44-209ENST00000433892 A0A087WW49 117 aa8.81□□□□□ -1
CD44-209ENST00000433892 IGLL5B9A064 214 aa8.81□□□□□ -1
CD44-209ENST00000433892 EMP1P54849 157 aa8.81□□□□□ -1
CD44-209ENST00000433892 CYSLTR1Q9Y271 337 aa8.81□□□□□ -1
CD44-209ENST00000433892 TP53TG1Q9Y2A0 90 aa8.81□□□□□ -1
CD44-209ENST00000433892 ACACBO00763 2458 aa8.81□□□□□ -1
CD44-209ENST00000433892 TRBV7-3A0A075B6L6 115 aa8.8□□□□□ -1
CD44-209ENST00000433892 E9PLD3 99 aa8.8□□□□□ -1
CD44-209ENST00000433892 TSHBP01222 138 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms