RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 Q6P435 159 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 LOXP28300 417 aaPredicted RBP2.66□□□□□ -1.98
SYNE1-212ENST00000423061 Q6ZS92 163 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 GFRA3O60609 400 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 DPH3P1Q9H4G8 78 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 CDSNQ15517 529 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 STHQ8IWL8 128 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 NTN3O00634 580 aaPredicted RBP2.66□□□□□ -1.98
SYNE1-212ENST00000423061 SHANK2-AS3Q9BTD1 123 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 ACYP1P07311 99 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 NDUFA12Q9UI09 145 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 CEP295Q9C0D2 2601 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 FLVCR1-AS1Q8TAF5 88 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 DYNAPQ8N1N2 210 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 ZNRF2Q8NHG8 242 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 EFNA2O43921 213 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 SLC25A45Q8N413 288 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 IGKV3D-20A0A0C4DH25 116 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 PMS2P5A8MQ11 134 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 TNFRSF13BO14836 293 aaPredicted RBP2.66□□□□□ -1.98
SYNE1-212ENST00000423061 C4orf48Q5BLP8 95 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 OVOL1O14753 267 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 RNASE13Q5GAN3 156 aaKnown RBP2.66□□□□□ -1.98
SYNE1-212ENST00000423061 CRPP02741 224 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 HIST2H2BCQ6DN03 193 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 HIST2H2BDQ6DRA6 164 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 HTN1P15515 57 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 LINC00311Q8N616 119 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 SETD2Q9BYW2 2564 aaPredicted RBP2.66□□□□□ -1.98
SYNE1-212ENST00000423061 TRIAP1O43715 76 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 U3KQK5 164 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.65□□□□□ -1.98
SYNE1-212ENST00000423061 RPL18AQ02543 176 aaKnown RBP2.65□□□□□ -1.98
SYNE1-212ENST00000423061 TLN2Q9Y4G6 2542 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 SS18Q15532 418 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 PRR14LQ5THK1 2151 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 ATP5G1P05496 136 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 FAM110DQ8TAY7 271 aaPredicted RBP2.65□□□□□ -1.98
SYNE1-212ENST00000423061 SLC25A15Q9Y619 301 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3-23P01764 117 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 OPRPNQ99935 248 aaPredicted RBP2.65□□□□□ -1.98
SYNE1-212ENST00000423061 NBR2O15453 112 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 LINC00474Q9P2X8 69 aa2.65□□□□□ -1.98
SYNE1-212ENST00000423061 TRBV6-6A0A0A6YYG2 114 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 C2orf16Q68DN1 1984 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 EXPH5Q8NEV8 1989 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 PSPHP1O15172 72 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 IGLV2-14P01704 120 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 DAND5Q8N907 189 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 ICOSQ9Y6W8 199 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 DKK1O94907 266 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 PIEZO2Q9H5I5 2752 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 PTPN13Q12923 2485 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 CSPG4Q6UVK1 2322 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 UBE2E1P51965 193 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 IGKV3D-15A0A087WSY6 115 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 FAM201AQ5SY85 155 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM263Q8WUH6 116 aaKnown RBP2.65□□□□□ -1.99
SYNE1-212ENST00000423061 PAX4O43316 350 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 Q6ZPA2 131 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 Q9HAA7 133 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 CCL4P13236 92 aa2.65□□□□□ -1.99
SYNE1-212ENST00000423061 IGLV3-12A0A075B6K2 115 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRR20EP86478 221 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRR20CP86479 221 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRR20DP86480 221 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRR20BP86481 221 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRR20AP86496 221 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 IGLV3-19P01714 112 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 ENHOQ6UWT2 76 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 TMEM14BQ9NUH8 114 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 CLPSP04118 112 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 C14orf132Q9NPU4 83 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 A0A087WWL8 130 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 C14orf178Q8N769 122 aaPredicted RBP2.64□□□□□ -1.99
SYNE1-212ENST00000423061 SLC25A29Q8N8R3 303 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PRSS22Q9GZN4 317 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 ZNRF1Q8ND25 227 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 GYPEP15421 78 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 ARRDC1-AS1Q9H2J1 176 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PSMB8P28062 276 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 SPRNQ5BIV9 151 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 IGHG2P01859 326 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 LY6G5BQ8NDX9 201 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 FAM240AA0A1B0GVK7 77 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 TRBV7-7A0A0K0K1E9 115 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 IGF2RP11717 2491 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PCNX3Q9H6A9 2034 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 LTBP2Q14767 1821 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PDE6HQ13956 83 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 Q6ZS46 218 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 MRPL53Q96EL3 112 aaKnown RBP2.64□□□□□ -1.99
SYNE1-212ENST00000423061 TANC2Q9HCD6 1990 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 TFF2Q03403 129 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 PIP4P2Q8N4L2 257 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 RFPL3SP0C7P2 107 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 TIRAPP58753 221 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 C9orf139Q6ZV77 190 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 FDCSPQ8NFU4 85 aa2.64□□□□□ -1.99
SYNE1-212ENST00000423061 ZNRD1Q9P1U0 126 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms