RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ZNF80P51504 273 aaPredicted RBP4.43□□□□□ -1.7
USP54-202ENST00000413442 RPS20P60866 119 aaKnown RBP4.43□□□□□ -1.7
USP54-202ENST00000413442 RHOHQ15669 191 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 LINC01559Q495D7 138 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 LYPD5Q6UWN5 251 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 Q86TA4 180 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 BAGE2Q86Y30 109 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 C6orf223Q8N319 242 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 C10orf126Q8N4M7 172 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 MLST8Q9BVC4 326 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 MRPL16Q9NX20 251 aaKnown RBP4.43□□□□□ -1.7
USP54-202ENST00000413442 NAGKQ9UJ70 344 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 ALMS1Q8TCU4 4167 aa4.43□□□□□ -1.7
USP54-202ENST00000413442 A0A087WWC5 75 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 IGKV3D-20A0A0C4DH25 116 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 A0A0J9YY99 117 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 TRBV10-1A0A0K0K1A3 114 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 PRSS29PA6NIE9 313 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 SMLR1H3BR10 107 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 K7EQD1 137 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 SIVA1O15304 175 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 RNASE3P12724 160 aaKnown RBP4.42□□□□□ -1.7
USP54-202ENST00000413442 GATA1P15976 413 aaPredicted RBP4.42□□□□□ -1.7
USP54-202ENST00000413442 EVI2AP22794 236 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 MEF2BQ02080 365 aaPredicted RBP4.42□□□□□ -1.7
USP54-202ENST00000413442 CFAP126Q5VTH2 177 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.42□□□□□ -1.7
USP54-202ENST00000413442 C11orf52Q96A22 123 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 DAZAP1Q96EP5 407 aaKnown RBP4.42□□□□□ -1.7
USP54-202ENST00000413442 ZNF479Q96JC4 524 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 SGK494Q96LW2 274 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 LINC00479Q96M42 142 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 C8orf49Q96NF6 230 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 VAX2Q9UIW0 290 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 PHLDA3Q9Y5J5 127 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 HYDINQ4G0P3 5121 aa4.42□□□□□ -1.7
USP54-202ENST00000413442 PLECQ15149 4684 aaKnown RBP4.42□□□□□ -1.7
USP54-202ENST00000413442 SACSQ9NZJ4 4579 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 TRAV8-6A0A0B4J262 113 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 TRAV34A0A0B4J273 112 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 PGPEP1LA6NFU8 196 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 F2Z2F3 143 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 EIF3GO75821 320 aaKnown RBP eCLIP4.41□□□□□ -1.7
USP54-202ENST00000413442 OR5AL1P0C617 328 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 ARMS2P0C7Q2 107 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 PRB4P10163 310 aaPredicted RBP4.41□□□□□ -1.7
USP54-202ENST00000413442 GYPEP15421 78 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 CRIP1P50238 77 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 CCL20P78556 96 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 TMEM97Q5BJF2 176 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 WDR73Q6P4I2 378 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 Q6ZQT7 251 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 ZFP82Q8N141 532 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 SFRP2Q96HF1 295 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 SSBP4Q9BWG4 385 aaPredicted RBP4.41□□□□□ -1.7
USP54-202ENST00000413442 SCRT2Q9NQ03 307 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 C11orf21Q9P2W6 132 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 LY96Q9Y6Y9 160 aa4.41□□□□□ -1.7
USP54-202ENST00000413442 TMEM250H0YL14 139 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 M0R2N4 97 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 EREGO14944 169 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 RTL8CO15255 209 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 SH2D1AO60880 128 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 DNAH10OSP0CZ25 163 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 SMCPP49901 116 aaPredicted RBP4.4□□□□□ -1.71
USP54-202ENST00000413442 PKIAP61925 76 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 ZNF506Q5JVG8 444 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 SLC25A29Q8N8R3 303 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 LYPD6BQ8NI32 183 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 ZC2HC1AQ96GY0 325 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 FAM210AQ96ND0 272 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 GTSF1LQ9H1H1 148 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 SMDT1Q9H4I9 107 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 GNG13Q9P2W3 67 aa4.4□□□□□ -1.71
USP54-202ENST00000413442 IGLV2-18A0A075B6J9 118 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 SNAI2O43623 268 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 IGHV3-53P01767 116 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 SFTA3P0C7M3 94 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 BCL2P10415 239 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 RPL35P42766 123 aaKnown RBP4.39□□□□□ -1.71
USP54-202ENST00000413442 GNG4P50150 75 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 RAB4BP61018 213 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 CACNG7P62955 275 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 TOR2AQ5JU69 321 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 LELP1Q5T871 98 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 C9orf62Q8N4C0 152 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 ATP6V0E2Q8NHE4 81 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 FRZBQ92765 325 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 CHCHD7Q9BUK0 85 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 PARLQ9H300 379 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 MED9Q9NWA0 146 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 PGPEP1Q9NXJ5 209 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 COX11Q9Y6N1 276 aa4.39□□□□□ -1.71
USP54-202ENST00000413442 IGHV3-38A0A0C4DH36 116 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 A0A1B0GVY2 172 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 SCO2A0A1W2PP80 73 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 NXPH4O95158 308 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 SMIM17P0DL12 118 aa4.38□□□□□ -1.71
USP54-202ENST00000413442 RPL36AP83881 106 aaKnown RBP4.38□□□□□ -1.71
USP54-202ENST00000413442 LAGE3Q14657 143 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms