RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 RNASE3P12724 160 aaKnown RBP11.15□□□□□ -0.62
CBX3-202ENST00000396386 TSPOP30536 169 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 SCGB2A2Q13296 93 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 LINC01545Q5VT33 79 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 WFDC12Q8WWY7 111 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 AP1S3Q96PC3 154 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 DUX3Q96PT4 197 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 DPH3P1Q9H4G8 78 aa11.15□□□□□ -0.62
CBX3-202ENST00000396386 MXRA5Q9NR99 2828 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 TRAV2A0A0B4J234 112 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 EREGO14944 169 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 NXPH4O95158 308 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 IGKV3-20P01619 116 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 Q8N8P6 123 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 NRACQ8N912 160 aa11.15□□□□□ -0.63
CBX3-202ENST00000396386 TRAV26-2A0A0B4J265 109 aa11.14□□□□□ -0.63
CBX3-202ENST00000396386 M0R143 59 aa11.14□□□□□ -0.63
CBX3-202ENST00000396386 DYNLRB2Q8TF09 96 aa11.14□□□□□ -0.63
CBX3-202ENST00000396386 C2orf88Q9BSF0 95 aa11.14□□□□□ -0.63
CBX3-202ENST00000396386 IGLL1P15814 213 aa11.13□□□□□ -0.63
CBX3-202ENST00000396386 CDKN1BP46527 198 aa11.13□□□□□ -0.63
CBX3-202ENST00000396386 DEFB125Q8N687 156 aa11.13□□□□□ -0.63
CBX3-202ENST00000396386 DLX4Q92988 240 aaPredicted RBP11.13□□□□□ -0.63
CBX3-202ENST00000396386 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 HSBP1L1C9JCN9 74 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 SPRY2O43597 315 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 CD7P09564 240 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 FXYD7P58549 80 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 SNHG12Q9BXW3 62 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 IGLV2-18A0A075B6J9 118 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 RNASE1P07998 156 aaKnown RBP11.12□□□□□ -0.63
CBX3-202ENST00000396386 FCER1GP30273 86 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 SPINK13Q1W4C9 94 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 C14orf178Q8N769 122 aaPredicted RBP11.12□□□□□ -0.63
CBX3-202ENST00000396386 ST20Q9HBF5 79 aa11.12□□□□□ -0.63
CBX3-202ENST00000396386 FLNAP21333 2647 aaKnown RBP11.11□□□□□ -0.63
CBX3-202ENST00000396386 TRAV12-2A0A075B6T6 113 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 MGPP08493 103 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 HNRNPA3P51991 378 aaKnown RBP11.11□□□□□ -0.63
CBX3-202ENST00000396386 AMTNQ6UX39 209 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 Q6ZN92 141 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 TMEM61Q8N0U2 210 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 IFI27L1Q96BM0 104 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 MCRIP2Q9BUT9 160 aaKnown RBP11.11□□□□□ -0.63
CBX3-202ENST00000396386 F8P00451 2351 aa11.11□□□□□ -0.63
CBX3-202ENST00000396386 DEFB131AP59861 70 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 hDV102S1A0JD36 115 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 HLA-DRB4P13762 266 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 LGALS9BQ3B8N2 356 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 LGALS9CQ6DKI2 356 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 CCDC168Q8NDH2 2452 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 PMCHL2Q9BQD1 86 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 HLA-DRB4X5D2U9 266 aa11.1□□□□□ -0.63
CBX3-202ENST00000396386 IGHV1OR15-1A0A075B7D0 117 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 IGHV3-16A0A0C4DH30 117 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 KNCNA6PVL3 124 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 HIST2H2BDQ6DRA6 164 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 RAX2Q96IS3 184 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 C9orf85Q96MD7 179 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 SMIM2Q9BVW6 85 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 C16orf95Q9H693 158 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 TMEM160Q9NX00 188 aa11.09□□□□□ -0.63
CBX3-202ENST00000396386 A8MTW9 85 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 SMIM17P0DL12 118 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 CD28P10747 220 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 FHL3Q13643 280 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 ZNF418Q8TF45 676 aaPredicted RBP11.08□□□□□ -0.64
CBX3-202ENST00000396386 TMEM158Q8WZ71 300 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 GOLT1BQ9Y3E0 138 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 C2CD3Q4AC94 2353 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 HIVEP1P15822 2718 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 A0A1W2PRX2 142 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 LAGE3Q14657 143 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 DEFB114Q30KQ6 69 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 POM121L12Q8N7R1 296 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 C11orf44Q8N8P7 122 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 RASL10AQ92737 203 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 C20orf78Q9BR46 151 aa11.08□□□□□ -0.64
CBX3-202ENST00000396386 MUC4Q99102 2169 aa11.07□□□□□ -0.64
CBX3-202ENST00000396386 PPP1R17O96001 155 aa11.07□□□□□ -0.64
CBX3-202ENST00000396386 SUMO2P61956 95 aaKnown RBP11.07□□□□□ -0.64
CBX3-202ENST00000396386 SYT8Q8NBV8 401 aa11.07□□□□□ -0.64
CBX3-202ENST00000396386 C18orf15Q96N68 181 aa11.07□□□□□ -0.64
CBX3-202ENST00000396386 MAP6D1Q9H9H5 199 aa11.07□□□□□ -0.64
CBX3-202ENST00000396386 TRGV11A0A075B6L2 103 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 A0A1B0GV90 55 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 Q8N1Y9 231 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 LINC01006Q8NI28 216 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 RPL39LQ96EH5 51 aaKnown RBP11.06□□□□□ -0.64
CBX3-202ENST00000396386 TSSC4Q9Y5U2 329 aaPredicted RBP11.06□□□□□ -0.64
CBX3-202ENST00000396386 KIF25-AS1Q9Y6Z4 181 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 H3BMM0 161 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 CCL24O00175 119 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 CD300EQ496F6 205 aaPredicted RBP11.06□□□□□ -0.64
CBX3-202ENST00000396386 SPAG8Q99932 426 aaPredicted RBP11.06□□□□□ -0.64
CBX3-202ENST00000396386 TLN2Q9Y4G6 2542 aa11.06□□□□□ -0.64
CBX3-202ENST00000396386 AGRNO00468 2067 aa11.05□□□□□ -0.64
CBX3-202ENST00000396386 ZNF469Q96JG9 3925 aaPredicted RBP11.05□□□□□ -0.64
CBX3-202ENST00000396386 TRAV25A0A0B4J276 109 aa11.05□□□□□ -0.64
CBX3-202ENST00000396386 TCAPO15273 167 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms