RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 ARMS2P0C7Q2 107 aa13.51□□□□□ -0.25
HOXA9-202ENST00000396345 HOXA5P20719 270 aa13.51□□□□□ -0.25
HOXA9-202ENST00000396345 ZNF876PQ49A33 203 aa13.51□□□□□ -0.25
HOXA9-202ENST00000396345 PTH2Q96A98 100 aa13.51□□□□□ -0.25
HOXA9-202ENST00000396345 NDUFAF3Q9BU61 184 aa13.51□□□□□ -0.25
HOXA9-202ENST00000396345 LY96Q9Y6Y9 160 aa13.51□□□□□ -0.25
HOXA9-202ENST00000396345 P01737 135 aa13.5□□□□□ -0.25
HOXA9-202ENST00000396345 CXCL1P09341 107 aa13.5□□□□□ -0.25
HOXA9-202ENST00000396345 FAM74A3Q4VXF1 159 aa13.49□□□□□ -0.25
HOXA9-202ENST00000396345 NUDT10Q8NFP7 164 aa13.49□□□□□ -0.25
HOXA9-202ENST00000396345 OR2D3Q8NGH3 330 aa13.49□□□□□ -0.25
HOXA9-202ENST00000396345 NUDT11Q96G61 164 aa13.49□□□□□ -0.25
HOXA9-202ENST00000396345 TRAV4A0A0B4J268 109 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 SFTA3P0C7M3 94 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 RPS20P60866 119 aaKnown RBP13.48□□□□□ -0.25
HOXA9-202ENST00000396345 POM121L12Q8N7R1 296 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 OR4C5Q8NGB2 326 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 ZNF479Q96JC4 524 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 SCRT2Q9NQ03 307 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 PHLDA3Q9Y5J5 127 aa13.48□□□□□ -0.25
HOXA9-202ENST00000396345 MED14OSP0DP75 135 aa13.47□□□□□ -0.25
HOXA9-202ENST00000396345 SYT8Q8NBV8 401 aa13.47□□□□□ -0.25
HOXA9-202ENST00000396345 RNASE7Q9H1E1 156 aaKnown RBP13.47□□□□□ -0.25
HOXA9-202ENST00000396345 SACSQ9NZJ4 4579 aa13.47□□□□□ -0.25
HOXA9-202ENST00000396345 TRAV26-1A0A087WT03 109 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 XKRY2A2RUG3 117 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 RS1O15537 224 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 GZMBP10144 247 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 FHL2Q14192 279 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 TMEM241Q24JQ0 296 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 SOHLH1Q5JUK2 328 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 PIK3CD-AS1Q5SR53 167 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 LINC01551Q86U37 167 aa13.46□□□□□ -0.25
HOXA9-202ENST00000396345 TRGV4A0A0C4DH28 118 aa13.45□□□□□ -0.26
HOXA9-202ENST00000396345 A0A0J9YY99 117 aa13.45□□□□□ -0.26
HOXA9-202ENST00000396345 CFAP126Q5VTH2 177 aa13.45□□□□□ -0.26
HOXA9-202ENST00000396345 DMRTA1Q5VZB9 504 aa13.45□□□□□ -0.26
HOXA9-202ENST00000396345 C15orf53Q8NAA6 179 aa13.45□□□□□ -0.26
HOXA9-202ENST00000396345 LYSTQ99698 3801 aa13.45□□□□□ -0.26
HOXA9-202ENST00000396345 ALMS1Q8TCU4 4167 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 A8MWV9 139 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 M0R381 172 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 SNAI2O43623 268 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 OR5AL1P0C617 328 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 SLAQ13239 276 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 FAM231DQ6ZW35 169 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 ZFP82Q8N141 532 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 SSBP4Q9BWG4 385 aaPredicted RBP13.44□□□□□ -0.26
HOXA9-202ENST00000396345 RPP21Q9H633 154 aaKnown RBP13.44□□□□□ -0.26
HOXA9-202ENST00000396345 NAT8Q9UHE5 227 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 HHLA3Q9XRX5 114 aa13.44□□□□□ -0.26
HOXA9-202ENST00000396345 GATCO43716 136 aaKnown RBP13.43□□□□□ -0.26
HOXA9-202ENST00000396345 NUDT3O95989 172 aa13.43□□□□□ -0.26
HOXA9-202ENST00000396345 ERVFC1-1P60608 527 aa13.43□□□□□ -0.26
HOXA9-202ENST00000396345 FER1L6-AS1Q8NA97 138 aa13.43□□□□□ -0.26
HOXA9-202ENST00000396345 PRO0255Q9UI72 69 aa13.43□□□□□ -0.26
HOXA9-202ENST00000396345 NACAE9PAV3 2078 aa13.43□□□□□ -0.26
HOXA9-202ENST00000396345 RYR2Q92736 4967 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 LCE6AA0A183 80 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 H3BNG1 76 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 PAX4O43316 350 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 CIDEAO60543 219 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 OR10AG1Q8NH19 301 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 LINC00476Q8WZB0 136 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 VSIG2Q96IQ7 327 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 TPPP3Q9BW30 176 aa13.42□□□□□ -0.26
HOXA9-202ENST00000396345 MUC21A0A0G2JKD1 596 aa13.41□□□□□ -0.26
HOXA9-202ENST00000396345 MUC21A0A140T8X8 626 aa13.41□□□□□ -0.26
HOXA9-202ENST00000396345 IGLC6P0CF74 106 aa13.41□□□□□ -0.26
HOXA9-202ENST00000396345 CRYBA4P53673 196 aa13.41□□□□□ -0.26
HOXA9-202ENST00000396345 RPL23P62829 140 aaKnown RBP13.41□□□□□ -0.26
HOXA9-202ENST00000396345 ADIRFQ15847 76 aa13.41□□□□□ -0.26
HOXA9-202ENST00000396345 JPT2Q9H910 190 aa13.41□□□□□ -0.26
HOXA9-202ENST00000396345 IGHV3-73A0A0B4J1V6 119 aa13.4□□□□□ -0.26
HOXA9-202ENST00000396345 NXPH4O95158 308 aa13.4□□□□□ -0.26
HOXA9-202ENST00000396345 LY6G6CO95867 125 aa13.4□□□□□ -0.26
HOXA9-202ENST00000396345 SPANXN1Q5VSR9 72 aa13.4□□□□□ -0.26
HOXA9-202ENST00000396345 LGALS9CQ6DKI2 356 aa13.4□□□□□ -0.26
HOXA9-202ENST00000396345 SFRP2Q96HF1 295 aa13.4□□□□□ -0.26
HOXA9-202ENST00000396345 DNAH1Q9P2D7 4330 aa13.4□□□□□ -0.27
HOXA9-202ENST00000396345 A0A1W2PPQ1 181 aa13.39□□□□□ -0.27
HOXA9-202ENST00000396345 GATA1P15976 413 aaPredicted RBP13.39□□□□□ -0.27
HOXA9-202ENST00000396345 SSTP61278 116 aa13.39□□□□□ -0.27
HOXA9-202ENST00000396345 ZFP2Q6ZN57 461 aa13.39□□□□□ -0.27
HOXA9-202ENST00000396345 ISOC2Q96AB3 205 aa13.39□□□□□ -0.27
HOXA9-202ENST00000396345 OSTCQ9NRP0 149 aa13.39□□□□□ -0.27
HOXA9-202ENST00000396345 F2Z2F3 143 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 P0DMU3 169 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 FAM231AP0DMU4 169 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 FAM231CP0DMU5 169 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 UQCC3Q6UW78 93 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 LYZL1Q6UWQ5 148 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 C15orf54Q8N8G6 183 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 SAMD10Q9BYL1 202 aa13.38□□□□□ -0.27
HOXA9-202ENST00000396345 A8MWL6 223 aa13.37□□□□□ -0.27
HOXA9-202ENST00000396345 CACNG7P62955 275 aa13.37□□□□□ -0.27
HOXA9-202ENST00000396345 CT83Q5H943 113 aa13.37□□□□□ -0.27
HOXA9-202ENST00000396345 UFSP1Q6NVU6 142 aa13.37□□□□□ -0.27
HOXA9-202ENST00000396345 A0A087WWL8 130 aa13.36□□□□□ -0.27
HOXA9-202ENST00000396345 RHODO00212 210 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms