RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ABCA1O95477 2261 aa12.11□□□□□ -0.47
HMGA1-202ENST00000347617 SPTAN1Q13813 2472 aaKnown RBP12.1□□□□□ -0.47
HMGA1-202ENST00000347617 IGHV1-69DA0A0B4J2H0 117 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 TSPAN13O95857 204 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 PPIFP30405 207 aaKnown RBP12.1□□□□□ -0.47
HMGA1-202ENST00000347617 PRB3Q04118 309 aaPredicted RBP12.1□□□□□ -0.47
HMGA1-202ENST00000347617 ERG28Q9UKR5 140 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 ARHGAP32A7KAX9 2087 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 KMT2BQ9UMN6 2715 aaPredicted RBP12.1□□□□□ -0.47
HMGA1-202ENST00000347617 ZFYVE26Q68DK2 2539 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 PRAC2D3DTV9 90 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 PSMB2P49721 201 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 SRSF9Q13242 221 aaKnown RBP eCLIP12.1□□□□□ -0.47
HMGA1-202ENST00000347617 HES1Q14469 280 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 SCGB1D4Q6XE38 83 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 C11orf21Q9P2W6 132 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 MYO18BQ8IUG5 2567 aa12.1□□□□□ -0.47
HMGA1-202ENST00000347617 UBR5O95071 2799 aaPredicted RBP12.1□□□□□ -0.47
HMGA1-202ENST00000347617 IGHV4-61A0A0C4DH41 118 aa12.09□□□□□ -0.47
HMGA1-202ENST00000347617 A8MWV9 139 aa12.09□□□□□ -0.47
HMGA1-202ENST00000347617 RPL32P62910 135 aaKnown RBP12.09□□□□□ -0.47
HMGA1-202ENST00000347617 Q8N6K4 173 aa12.09□□□□□ -0.47
HMGA1-202ENST00000347617 FAM110DQ8TAY7 271 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-202ENST00000347617 DPH3P1Q9H4G8 78 aa12.09□□□□□ -0.47
HMGA1-202ENST00000347617 ZFAND3Q9H8U3 227 aa12.09□□□□□ -0.47
HMGA1-202ENST00000347617 CLEC3BP05452 202 aa12.08□□□□□ -0.48
HMGA1-202ENST00000347617 CD7P09564 240 aa12.08□□□□□ -0.48
HMGA1-202ENST00000347617 ZNF688P0C7X2 276 aa12.08□□□□□ -0.48
HMGA1-202ENST00000347617 IGFL4Q6B9Z1 124 aa12.08□□□□□ -0.48
HMGA1-202ENST00000347617 BAALCQ8WXS3 180 aa12.08□□□□□ -0.48
HMGA1-202ENST00000347617 LOC107984156A0A0G2JMH3 177 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 ARL17AQ8IVW1 177 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 AJUBAQ96IF1 538 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 TRAV26-2A0A0B4J265 109 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 C2orf66Q6UXQ4 117 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 NFE4Q86UQ8 179 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 NDUFA11Q86Y39 141 aa12.07□□□□□ -0.48
HMGA1-202ENST00000347617 IGHV4-30-2A0A087WSY4 118 aa12.06□□□□□ -0.48
HMGA1-202ENST00000347617 PRSS29PA6NIE9 313 aa12.06□□□□□ -0.48
HMGA1-202ENST00000347617 MT-ATP8P03928 68 aa12.06□□□□□ -0.48
HMGA1-202ENST00000347617 GATA3P23771 443 aa12.06□□□□□ -0.48
HMGA1-202ENST00000347617 ASIPP42127 132 aa12.06□□□□□ -0.48
HMGA1-202ENST00000347617 Q5PR19 223 aa12.06□□□□□ -0.48
HMGA1-202ENST00000347617 NPFFO15130 113 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 XGP55808 180 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 NDPQ00604 133 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 RASL10AQ92737 203 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 SPANXA1Q9NS26 97 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 ZFAND6Q6FIF0 208 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 LRRC75A-AS1Q8N1F1 130 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 RNF182Q8N6D2 247 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 CARD19Q96LW7 228 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 METTL26Q96S19 204 aa12.05□□□□□ -0.48
HMGA1-202ENST00000347617 BEX4Q9NWD9 120 aaPredicted RBP12.05□□□□□ -0.48
HMGA1-202ENST00000347617 AKAP6Q13023 2319 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 TRAV8-2A0A0B4J237 113 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 B4DSR2 109 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 H3BVH4 76 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 IGHV3-23P01764 117 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 SAA4P35542 130 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 C9orf139Q6ZV77 190 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 POM121L12Q8N7R1 296 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 TMEM141Q96I45 108 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 LINC00477Q96M19 166 aa12.04□□□□□ -0.48
HMGA1-202ENST00000347617 TRAV21A0A0B4J279 112 aa12.03□□□□□ -0.48
HMGA1-202ENST00000347617 MSMBP08118 114 aa12.03□□□□□ -0.48
HMGA1-202ENST00000347617 C10orf126Q8N4M7 172 aa12.03□□□□□ -0.48
HMGA1-202ENST00000347617 U3KQE9 123 aa12.03□□□□□ -0.48
HMGA1-202ENST00000347617 A0A0J9YY99 117 aa12.02□□□□□ -0.48
HMGA1-202ENST00000347617 IGHV1-69P01742 117 aa12.02□□□□□ -0.48
HMGA1-202ENST00000347617 TEX29Q8N6K0 151 aa12.02□□□□□ -0.48
HMGA1-202ENST00000347617 LINC01600Q96MT4 127 aa12.02□□□□□ -0.48
HMGA1-202ENST00000347617 IGHV7-81A0A0B4J1V7 117 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 C11orf86A6NJI1 115 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 TCL1BO95988 128 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 SLC25A29Q8N8R3 303 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 EEF1AKMT3Q96AZ1 226 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 PLEKHB2Q96CS7 222 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 ANAPC13Q9BS18 74 aa12.02□□□□□ -0.49
HMGA1-202ENST00000347617 COL12A1Q99715 3063 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 TRBV7-1A0A0A6YYK4 115 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 TRBV7-9A0A0J9YWB2 115 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 CLPSL1A2RUU4 121 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 OVOL1O14753 267 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 GAGE5Q13069 117 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 GAGE6Q13070 117 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 PMVKQ15126 192 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 C15orf32Q32M92 178 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 ZFP2Q6ZN57 461 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 PRO1854Q9UHT4 67 aa12.01□□□□□ -0.49
HMGA1-202ENST00000347617 WNK2Q9Y3S1 2297 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 SCGB1C2P0DMR2 95 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 WFDC12Q8WWY7 111 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 TIMM17AQ99595 171 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 KLK15Q9H2R5 256 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 IGHV3-30P01768 117 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 IGHV3-30-5P0DP03 117 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 SRD5A1P18405 259 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 FHL3Q13643 280 aa12□□□□□ -0.49
HMGA1-202ENST00000347617 Q6Q795 121 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms