RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 AMN1Q8IY45 258 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 ATOH7Q8N100 152 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 LINC01006Q8NI28 216 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 C4orf3Q8WVX3 66 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 SMIM2Q9BVW6 85 aa5.28□□□□□ -1.56
SF3B1-201ENST00000335508 SDHAF1A6NFY7 115 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 C5orf52A6NGY3 159 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 NMUP48645 174 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 SEC61GP60059 68 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 KLF5Q13887 457 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-201ENST00000335508 C1orf229Q6ZS94 237 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-201ENST00000335508 LGALS3P17931 250 aaKnown RBP5.27□□□□□ -1.57
SF3B1-201ENST00000335508 RPL13AP40429 203 aaKnown RBP5.27□□□□□ -1.57
SF3B1-201ENST00000335508 RNF182Q8N6D2 247 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 VGLL1Q99990 258 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 TRAV9-2A0A087WT02 112 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 IGKV3OR2-268A0A0C4DH90 116 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 ANXA2RQ3ZCQ2 193 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 SH2D6Q7Z4S9 175 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 IGHV4OR15-8A0A075B7B6 117 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 A0A087WW49 117 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 UBE2CO00762 179 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 NDUFA7O95182 113 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 DEFB130BP0DP73 79 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 DEFB130AP0DP74 79 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 LAGE3Q14657 143 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 C18orf32Q8TCD1 76 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 C18orf15Q96N68 181 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 WDFY4Q6ZS81 3184 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 IGLV1-40P01703 118 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 KRTAP10-9P60411 292 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 C5orf47Q569G3 176 aa5.27□□□□□ -1.57
SF3B1-201ENST00000335508 NCKAP5O14513 1909 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 DPM2O94777 84 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 GZMBP10144 247 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 ZC2HC1AQ96GY0 325 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 GHRHP01286 108 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 HLA-DRB4P13762 266 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 NIT1Q86X76 327 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 NDUFA11Q86Y39 141 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 OR5A1Q8NGJ0 315 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 HLA-DRB4X5D2U9 266 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 AVPP01185 164 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 PSMB8P28062 276 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 HIST3H2BBQ8N257 126 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 ZFAND3Q9H8U3 227 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 RPL35AP18077 110 aaKnown RBP5.26□□□□□ -1.57
SF3B1-201ENST00000335508 DAD1P61803 113 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 C2orf66Q6UXQ4 117 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 FAM19A2Q8N3H0 131 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 MLST8Q9BVC4 326 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 MRPS16Q9Y3D3 137 aaKnown RBP5.26□□□□□ -1.57
SF3B1-201ENST00000335508 TRAV26-1A0A087WT03 109 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 TMEM213A2RRL7 107 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 TMEM262E9PQX1 116 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 SCGB1C2P0DMR2 95 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 RHOHQ15669 191 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 DEFB136Q30KP8 78 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 UNQ9165/PRO28630Q6UXU0 137 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 CSTL1Q9H114 145 aa5.26□□□□□ -1.57
SF3B1-201ENST00000335508 LINC01548A6NM66 108 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 EVI2AP22794 236 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 ERCC8Q13216 396 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 C1orf159Q96HA4 380 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 HIVEP1P15822 2718 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 PLNP26678 52 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 SLURP1P55000 103 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 MORN5Q5VZ52 161 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 TRBV10-1A0A0K0K1A3 114 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 B5MCH6 92 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 MEIG1Q5JSS6 88 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 SMIM27A0A1W2PRY6 76 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 DLX4Q92988 240 aaPredicted RBP5.25□□□□□ -1.57
SF3B1-201ENST00000335508 SMAD5-AS1Q9Y6J3 95 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 HCFC1P51610 2035 aa5.25□□□□□ -1.57
SF3B1-201ENST00000335508 TRAV8-6A0A0B4J262 113 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 NCR2O95944 276 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 PLEKHB2Q96CS7 222 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 NDUFAF3Q9BU61 184 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 PLA2G2EQ9NZK7 142 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 STAB2Q8WWQ8 2551 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 M0R2P5 195 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 C10orf126Q8N4M7 172 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 C17orf77Q96MU5 243 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 ATP5G1P05496 136 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 CD28P10747 220 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 EGR2P11161 476 aaPredicted RBP5.24□□□□□ -1.57
SF3B1-201ENST00000335508 DEFB114Q30KQ6 69 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 TEX43Q6ZNM6 134 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 Q8N8P6 123 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 SMIM9A6NGZ8 99 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 DLEU1O43261 78 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 SPART-AS1P0CW21 52 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 F6UB75 175 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 ZC2HC1BQ5TFG8 222 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 PIFOQ8TCI5 191 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 U3KQE9 123 aa5.24□□□□□ -1.57
SF3B1-201ENST00000335508 CRPP02741 224 aa5.23□□□□□ -1.57
SF3B1-201ENST00000335508 CTRLP40313 264 aa5.23□□□□□ -1.57
SF3B1-201ENST00000335508 ASPHD1Q5U4P2 390 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms