RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SSBP4Q9BWG4 385 aaPredicted RBP12.5□□□□□ -0.41
CLN3-252ENST00000636907 SORL1Q92673 2214 aa12.5□□□□□ -0.41
CLN3-252ENST00000636907 MUC21A0A0G2JKD1 596 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 MUC21A0A140T8X8 626 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 H3BMM0 161 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 M0R2Z0 102 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 ODF3L2Q3SX64 289 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 MUC21Q5SSG8 566 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 BORCS7Q96B45 105 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 AGRNO00468 2067 aa12.49□□□□□ -0.41
CLN3-252ENST00000636907 A8MTW9 85 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 APCSP02743 223 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 CDKN1BP46527 198 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 SPINK13Q1W4C9 94 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 KRTAP24-1Q3LI83 254 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 KIAA1644Q3SXP7 199 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 TRAV12-2A0A075B6T6 113 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 TRAV12-3A0A0B4J271 114 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 C7orf71A4D174 169 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 TSPOP30536 169 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 SSTP61278 116 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 ANXA2RQ3ZCQ2 193 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 GFI1BQ5VTD9 330 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 OR2K2Q8NGT1 345 aa12.48□□□□□ -0.41
CLN3-252ENST00000636907 TENM1Q9UKZ4 2725 aa12.47□□□□□ -0.41
CLN3-252ENST00000636907 RBMY1BA6NDE4 496 aaKnown RBP12.47□□□□□ -0.41
CLN3-252ENST00000636907 RBMY1EA6NEQ0 496 aaKnown RBP12.47□□□□□ -0.41
CLN3-252ENST00000636907 RBMY1DP0C7P1 496 aaKnown RBP12.47□□□□□ -0.41
CLN3-252ENST00000636907 TEP1Q99973 2627 aaKnown RBP12.47□□□□□ -0.41
CLN3-252ENST00000636907 A0A1B0GW15 77 aa12.46□□□□□ -0.41
CLN3-252ENST00000636907 UBE2CO00762 179 aa12.46□□□□□ -0.41
CLN3-252ENST00000636907 ZNF324O75467 553 aaPredicted RBP12.46□□□□□ -0.41
CLN3-252ENST00000636907 GATD1Q8NB37 220 aa12.46□□□□□ -0.41
CLN3-252ENST00000636907 CNFNQ9BYD5 112 aa12.46□□□□□ -0.41
CLN3-252ENST00000636907 OR11H12B2RN74 326 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 F2Z2F3 143 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 S100A8P05109 93 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 HOXA5P20719 270 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 FXYD7P58549 80 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 SPATA3Q8NHX4 192 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 NTF3P20783 257 aa12.45□□□□□ -0.42
CLN3-252ENST00000636907 H3BVH4 76 aa12.44□□□□□ -0.42
CLN3-252ENST00000636907 GNRH2O43555 120 aa12.44□□□□□ -0.42
CLN3-252ENST00000636907 SNAI2O43623 268 aa12.44□□□□□ -0.42
CLN3-252ENST00000636907 TWIST1Q15672 202 aa12.44□□□□□ -0.42
CLN3-252ENST00000636907 BEAN1Q3B7T3 259 aa12.44□□□□□ -0.42
CLN3-252ENST00000636907 OR5AL1P0C617 328 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 SRIP30626 198 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 ASIPP42127 132 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 COA6Q5JTJ3 125 aaKnown RBP12.43□□□□□ -0.42
CLN3-252ENST00000636907 FAM159AQ6UWV7 190 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 ZNF493Q6ZR52 646 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 PRIMA1Q86XR5 153 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 OR10AG1Q8NH19 301 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 ATRQ13535 2644 aa12.43□□□□□ -0.42
CLN3-252ENST00000636907 CRXO43186 299 aaPredicted RBP12.42□□□□□ -0.42
CLN3-252ENST00000636907 CD7P09564 240 aa12.42□□□□□ -0.42
CLN3-252ENST00000636907 MSRB1Q9NZV6 116 aa12.42□□□□□ -0.42
CLN3-252ENST00000636907 CMC4P56277 68 aaPredicted RBP12.42□□□□□ -0.42
CLN3-252ENST00000636907 KCNS1Q96KK3 526 aa12.42□□□□□ -0.42
CLN3-252ENST00000636907 TP53TG3Q9ULZ0 132 aa12.42□□□□□ -0.42
CLN3-252ENST00000636907 TIMM8BQ9Y5J9 83 aaPredicted RBP12.42□□□□□ -0.42
CLN3-252ENST00000636907 LOC102724200A0A096LPH7 203 aaPredicted RBP12.41□□□□□ -0.42
CLN3-252ENST00000636907 RBMY1A1P0DJD3 496 aaKnown RBP12.41□□□□□ -0.42
CLN3-252ENST00000636907 RBMY1CP0DJD4 496 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 S100A4P26447 101 aaKnown RBP12.41□□□□□ -0.42
CLN3-252ENST00000636907 RBMY1FQ15415 496 aaKnown RBP12.41□□□□□ -0.42
CLN3-252ENST00000636907 TDRG1Q3Y452 100 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 PDZD11Q5EBL8 140 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 DNLZQ5SXM8 178 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 STHQ8IWL8 128 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 HIST3H2BBQ8N257 126 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 CLUHP3Q96NS8 147 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 C19orf73Q9NVV2 129 aa12.41□□□□□ -0.42
CLN3-252ENST00000636907 IFITM10A6NMD0 228 aa12.4□□□□□ -0.42
CLN3-252ENST00000636907 SPRY2O43597 315 aa12.4□□□□□ -0.42
CLN3-252ENST00000636907 RNASE3P12724 160 aaKnown RBP12.4□□□□□ -0.42
CLN3-252ENST00000636907 Q0VG73 95 aa12.4□□□□□ -0.42
CLN3-252ENST00000636907 C9orf66Q5T8R8 295 aa12.4□□□□□ -0.42
CLN3-252ENST00000636907 FAM110AQ9BQ89 295 aa12.4□□□□□ -0.42
CLN3-252ENST00000636907 ALKBH7Q9BT30 221 aaPredicted RBP12.4□□□□□ -0.42
CLN3-252ENST00000636907 IGHV4-4A0A075B6R2 117 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 IGHV1OR15-1A0A075B7D0 117 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 MED14OSP0DP75 135 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 INSL3P51460 131 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 CACNG7P62955 275 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 TRPT1Q86TN4 253 aaKnown RBP12.39□□□□□ -0.43
CLN3-252ENST00000636907 TMEM256Q8N2U0 113 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 WFDC10AQ9H1F0 79 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 SCRT2Q9NQ03 307 aa12.39□□□□□ -0.43
CLN3-252ENST00000636907 SPANXN1Q5VSR9 72 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 FAM104BQ5XKR9 115 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 AMN1Q8IY45 258 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 TMEM191AQ9H0A3 160 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 AKR1D1P51857 326 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 OR10J3Q5JRS4 329 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 BAGE3Q86Y29 109 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 C18orf32Q8TCD1 76 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 ZNF747Q9BV97 191 aa12.38□□□□□ -0.43
CLN3-252ENST00000636907 VWFP04275 2813 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms