RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SPINK4O60575 86 aa14.61□□□□□ -0.07
CLN3-240ENST00000631023 LGALS9BQ3B8N2 356 aa14.61□□□□□ -0.07
CLN3-240ENST00000631023 NACAE9PAV3 2078 aa14.61□□□□□ -0.07
CLN3-240ENST00000631023 TRGV2A0A075B6R0 118 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 PFN1P07737 140 aaKnown RBP14.6□□□□□ -0.07
CLN3-240ENST00000631023 TMEM88Q6PEY1 159 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 SDF2L1Q9HCN8 221 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 MANBALQ9NQG1 85 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 ZFP30Q9Y2G7 519 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 RYR3Q15413 4870 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 AKR1C3P42330 323 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 ZNF80P51504 273 aaPredicted RBP14.6□□□□□ -0.07
CLN3-240ENST00000631023 Q86TA4 180 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 C15orf53Q8NAA6 179 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 C18orf15Q96N68 181 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 SPXQ9BT56 116 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 MDFICQ9P1T7 246 aa14.6□□□□□ -0.07
CLN3-240ENST00000631023 GNG13Q9P2W3 67 aa14.59□□□□□ -0.07
CLN3-240ENST00000631023 GNRH2O43555 120 aa14.58□□□□□ -0.08
CLN3-240ENST00000631023 S100A9P06702 114 aaKnown RBP14.58□□□□□ -0.08
CLN3-240ENST00000631023 P0DMU3 169 aa14.58□□□□□ -0.08
CLN3-240ENST00000631023 FAM231AP0DMU4 169 aa14.58□□□□□ -0.08
CLN3-240ENST00000631023 FAM231CP0DMU5 169 aa14.58□□□□□ -0.08
CLN3-240ENST00000631023 RYR2Q92736 4967 aa14.57□□□□□ -0.08
CLN3-240ENST00000631023 TRBV6-1A0A0K0K1D8 114 aa14.57□□□□□ -0.08
CLN3-240ENST00000631023 FABP5P3A8MUU1 101 aa14.57□□□□□ -0.08
CLN3-240ENST00000631023 CCL20P78556 96 aa14.57□□□□□ -0.08
CLN3-240ENST00000631023 OR5I1Q13606 314 aa14.57□□□□□ -0.08
CLN3-240ENST00000631023 TYMSP04818 313 aa14.56□□□□□ -0.08
CLN3-240ENST00000631023 NKX2-5P52952 324 aaPredicted RBP14.56□□□□□ -0.08
CLN3-240ENST00000631023 TXNDC17Q9BRA2 123 aa14.56□□□□□ -0.08
CLN3-240ENST00000631023 MRPL16Q9NX20 251 aaKnown RBP14.56□□□□□ -0.08
CLN3-240ENST00000631023 IGHV3-16A0A0C4DH30 117 aa14.56□□□□□ -0.08
CLN3-240ENST00000631023 LTAP01374 205 aa14.55□□□□□ -0.08
CLN3-240ENST00000631023 IFNA1P01562 189 aa14.55□□□□□ -0.08
CLN3-240ENST00000631023 COX8CQ7Z4L0 72 aa14.55□□□□□ -0.08
CLN3-240ENST00000631023 SCO2A0A1W2PP80 73 aa14.54□□□□□ -0.08
CLN3-240ENST00000631023 ALKAL2Q6UX46 152 aa14.54□□□□□ -0.08
CLN3-240ENST00000631023 RASL10AQ92737 203 aa14.54□□□□□ -0.08
CLN3-240ENST00000631023 C11orf21Q9P2W6 132 aa14.54□□□□□ -0.08
CLN3-240ENST00000631023 M0R2P5 195 aa14.53□□□□□ -0.08
CLN3-240ENST00000631023 HOXA5P20719 270 aa14.52□□□□□ -0.08
CLN3-240ENST00000631023 BLOC1S1P78537 153 aa14.52□□□□□ -0.08
CLN3-240ENST00000631023 FAM162BQ5T6X4 162 aa14.52□□□□□ -0.08
CLN3-240ENST00000631023 ZC2HC1AQ96GY0 325 aa14.52□□□□□ -0.08
CLN3-240ENST00000631023 HYDINQ4G0P3 5121 aa14.52□□□□□ -0.08
CLN3-240ENST00000631023 TRAV26-1A0A087WT03 109 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 NUDT3O95989 172 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 TAGLN2P37802 199 aaKnown RBP14.51□□□□□ -0.09
CLN3-240ENST00000631023 POM121L12Q8N7R1 296 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 H3BNG1 76 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 ORM1P02763 201 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 UBE2DNLQ8IWF7 75 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 BOLA1Q9Y3E2 137 aa14.51□□□□□ -0.09
CLN3-240ENST00000631023 MEF2BQ02080 365 aaPredicted RBP14.5□□□□□ -0.09
CLN3-240ENST00000631023 SLAQ13239 276 aa14.5□□□□□ -0.09
CLN3-240ENST00000631023 BAGE2Q86Y30 109 aa14.5□□□□□ -0.09
CLN3-240ENST00000631023 PDE6DO43924 150 aa14.49□□□□□ -0.09
CLN3-240ENST00000631023 IGHV3-53P01767 116 aa14.49□□□□□ -0.09
CLN3-240ENST00000631023 CRIP1P50238 77 aa14.49□□□□□ -0.09
CLN3-240ENST00000631023 RNF212Q495C1 297 aa14.49□□□□□ -0.09
CLN3-240ENST00000631023 C11orf52Q96A22 123 aa14.49□□□□□ -0.09
CLN3-240ENST00000631023 IGKV3D-20A0A0C4DH25 116 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 A0A0J9YY99 117 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 B4DEV8 164 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 SH2D1AO60880 128 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 BCL2P10415 239 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 S100A4P26447 101 aaKnown RBP14.48□□□□□ -0.09
CLN3-240ENST00000631023 ZNF674Q2M3X9 581 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 VAX2Q9UIW0 290 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 VPS13DQ5THJ4 4388 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 KMT2AQ03164 3969 aa14.48□□□□□ -0.09
CLN3-240ENST00000631023 ASIPP42127 132 aa14.47□□□□□ -0.09
CLN3-240ENST00000631023 RPL35P42766 123 aaKnown RBP14.47□□□□□ -0.09
CLN3-240ENST00000631023 NHLRC2Q8NBF2 726 aa14.47□□□□□ -0.09
CLN3-240ENST00000631023 C9orf85Q96MD7 179 aa14.47□□□□□ -0.09
CLN3-240ENST00000631023 ZNF876PQ49A33 203 aa14.47□□□□□ -0.09
CLN3-240ENST00000631023 PRO0255Q9UI72 69 aa14.47□□□□□ -0.09
CLN3-240ENST00000631023 TRAV4A0A0B4J268 109 aa14.46□□□□□ -0.09
CLN3-240ENST00000631023 TRGV4A0A0C4DH28 118 aa14.46□□□□□ -0.09
CLN3-240ENST00000631023 KRBOX1C9JBD0 128 aa14.46□□□□□ -0.09
CLN3-240ENST00000631023 RNASE3P12724 160 aaKnown RBP14.46□□□□□ -0.09
CLN3-240ENST00000631023 OR4C5Q8NGB2 326 aa14.46□□□□□ -0.09
CLN3-240ENST00000631023 MLST8Q9BVC4 326 aa14.46□□□□□ -0.09
CLN3-240ENST00000631023 HHLA3Q9XRX5 114 aa14.46□□□□□ -0.09
CLN3-240ENST00000631023 C9JCJ5 164 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 M0R036 132 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 PAX4O43316 350 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 CCL18P55774 89 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 FHL2Q14192 279 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 PTH2Q96A98 100 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 VSIG2Q96IQ7 327 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 MED9Q9NWA0 146 aa14.45□□□□□ -0.1
CLN3-240ENST00000631023 FAM3BP58499 235 aaPredicted RBP14.44□□□□□ -0.1
CLN3-240ENST00000631023 ZNF479Q96JC4 524 aa14.44□□□□□ -0.1
CLN3-240ENST00000631023 SFTA3P0C7M3 94 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 LINC01559Q495D7 138 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 DNLZQ5SXM8 178 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 LYPD6BQ8NI32 183 aa14.43□□□□□ -0.1
CLN3-240ENST00000631023 DERL1Q9BUN8 251 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms