RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 OR2D3Q8NGH3 330 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 TMEM208Q9BTX3 173 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 FRMD6-AS1P0C7T7 363 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 RBMY1A1P0DJD3 496 aaKnown RBP7.82□□□□□ -1.16
SS18-213ENST00000579640 RBMY1CP0DJD4 496 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 RBMY1FQ15415 496 aaKnown RBP7.82□□□□□ -1.16
SS18-213ENST00000579640 Q6ZWC4 215 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 C1orf158Q8N1D5 194 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 LINC01587Q99440 93 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 RPS10P5Q9NQ39 176 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 TMEM242Q9NWH2 141 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 C11orf21Q9P2W6 132 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 NAGKQ9UJ70 344 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 V9GYV3 84 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 IGKV3D-20A0A0C4DH25 116 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 A8MWL6 223 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 PRB2P02812 416 aaPredicted RBP7.82□□□□□ -1.16
SS18-213ENST00000579640 ANXA2RQ3ZCQ2 193 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 ZNF705AQ6ZN79 300 aaPredicted RBP7.82□□□□□ -1.16
SS18-213ENST00000579640 Q6ZQT7 251 aa7.82□□□□□ -1.16
SS18-213ENST00000579640 TRGV11A0A075B6L2 103 aa7.81□□□□□ -1.16
SS18-213ENST00000579640 MUC21Q5SSG8 566 aa7.81□□□□□ -1.16
SS18-213ENST00000579640 GFRA4Q9GZZ7 299 aa7.81□□□□□ -1.16
SS18-213ENST00000579640 NOTCH1P46531 2555 aa7.81□□□□□ -1.16
SS18-213ENST00000579640 FAM231BA6NCW3 169 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 RPL19P84098 196 aaKnown RBP7.8□□□□□ -1.16
SS18-213ENST00000579640 DNLZQ5SXM8 178 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 TSKUQ8WUA8 353 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 RCHY1Q96PM5 261 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 IMMP2LQ96T52 175 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 TP53TG1Q9Y2A0 90 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 NBEAL1Q6ZS30 2694 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 IGHV3OR16-12A0A075B7B8 117 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 TMSB15BA0A087X1C1 80 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 SMIM9A6NGZ8 99 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 CBY3A6NI87 242 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 TYMSP04818 313 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 ASIPP42127 132 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 DEFB121Q5J5C9 76 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 RNF183Q96D59 192 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 NEU1Q99519 415 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 IL36BQ9NZH7 164 aa7.8□□□□□ -1.16
SS18-213ENST00000579640 A0A1W2PPQ1 181 aa7.79□□□□□ -1.16
SS18-213ENST00000579640 CXorf65A6NEN9 183 aa7.79□□□□□ -1.16
SS18-213ENST00000579640 MED14OSP0DP75 135 aa7.79□□□□□ -1.16
SS18-213ENST00000579640 DEFB135Q30KP9 77 aa7.79□□□□□ -1.16
SS18-213ENST00000579640 ATRAIDQ6UW56 229 aa7.79□□□□□ -1.16
SS18-213ENST00000579640 FBN3Q75N90 2809 aa7.79□□□□□ -1.16
SS18-213ENST00000579640 SMIM27A0A1W2PRY6 76 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 GNRH2O43555 120 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 S100A4P26447 101 aaKnown RBP7.78□□□□□ -1.16
SS18-213ENST00000579640 FOXA3P55318 350 aaPredicted RBP7.78□□□□□ -1.16
SS18-213ENST00000579640 RRN3P1Q2M238 152 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 KCNIP4Q6PIL6 250 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 ZNF493Q6ZR52 646 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 MRAPQ8TCY5 172 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 IGHV3-16A0A0C4DH30 117 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 GRIFINA4D1Z8 144 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 SPRY2O43597 315 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 IGLC6P0CF74 106 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 HTN1P15515 57 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 S100PP25815 95 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 ZNF415Q09FC8 603 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 ZNF575Q86XF7 245 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 FER1L6-AS1Q8NA97 138 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 TMEM263Q8WUH6 116 aaKnown RBP7.78□□□□□ -1.16
SS18-213ENST00000579640 NAT8BQ9UHF3 227 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 TP53TG3Q9ULZ0 132 aa7.78□□□□□ -1.16
SS18-213ENST00000579640 F2Z2F3 143 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 OR5AL1P0C617 328 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 GZMBP10144 247 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 GTSF1Q8WW33 167 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 C16orf74Q96GX8 76 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 SSBP4Q9BWG4 385 aaPredicted RBP7.77□□□□□ -1.17
SS18-213ENST00000579640 SMCO4Q9NRQ5 59 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 X6R8D5 127 aa7.77□□□□□ -1.17
SS18-213ENST00000579640 TRAV9-1A0A075B6T8 112 aa7.76□□□□□ -1.17
SS18-213ENST00000579640 HIGD1CA8MV81 97 aa7.76□□□□□ -1.17
SS18-213ENST00000579640 SNAI2O43623 268 aa7.76□□□□□ -1.17
SS18-213ENST00000579640 MIFP14174 115 aa7.76□□□□□ -1.17
SS18-213ENST00000579640 OR11H2Q8NH07 326 aa7.76□□□□□ -1.17
SS18-213ENST00000579640 RNASE8Q8TDE3 154 aaKnown RBP7.76□□□□□ -1.17
SS18-213ENST00000579640 C9orf85Q96MD7 179 aa7.76□□□□□ -1.17
SS18-213ENST00000579640 H3BVH4 76 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 ARMS2P0C7Q2 107 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 RNASE3P12724 160 aaKnown RBP7.75□□□□□ -1.17
SS18-213ENST00000579640 CTRLP40313 264 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 TCL1AP56279 114 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 WDR73Q6P4I2 378 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 SBSPONQ8IVN8 264 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 C11orf72Q8NBR9 251 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 NUP35Q8NFH5 326 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 BORCS7Q96B45 105 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 BTF3L4Q96K17 158 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 SPATA25Q9BR10 227 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 OVOL2Q9BRP0 275 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 SPXQ9BT56 116 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 SCRT2Q9NQ03 307 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 MDFICQ9P1T7 246 aa7.75□□□□□ -1.17
SS18-213ENST00000579640 SNURFLB1AK76 121 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms