RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZFP30Q9Y2G7 519 aa12.29□□□□□ -0.44
CLN3-217ENST00000565354 VPS13DQ5THJ4 4388 aa12.28□□□□□ -0.44
CLN3-217ENST00000565354 PLAC8L1A1L4L8 177 aa12.28□□□□□ -0.44
CLN3-217ENST00000565354 HTN3P15516 51 aa12.28□□□□□ -0.44
CLN3-217ENST00000565354 MEF2BQ02080 365 aaPredicted RBP12.28□□□□□ -0.44
CLN3-217ENST00000565354 GSN-AS1Q9NRJ2 163 aa12.28□□□□□ -0.44
CLN3-217ENST00000565354 VAX2Q9UIW0 290 aa12.28□□□□□ -0.44
CLN3-217ENST00000565354 DEFB131BA0A096LNP1 70 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 PFN1P07737 140 aaKnown RBP12.27□□□□□ -0.45
CLN3-217ENST00000565354 IBA57Q5T440 356 aaKnown RBP12.27□□□□□ -0.45
CLN3-217ENST00000565354 TMEM183AQ8IXX5 376 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 C2CD4CQ8TF44 421 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 KCNS1Q96KK3 526 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 SDF2L1Q9HCN8 221 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 TP53TG3Q9ULZ0 132 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 KLF12Q9Y4X4 402 aa12.27□□□□□ -0.45
CLN3-217ENST00000565354 TRBV6-1A0A0K0K1D8 114 aa12.26□□□□□ -0.45
CLN3-217ENST00000565354 PDE6DO43924 150 aa12.26□□□□□ -0.45
CLN3-217ENST00000565354 ZNF80P51504 273 aaPredicted RBP12.26□□□□□ -0.45
CLN3-217ENST00000565354 GAGE12BA1L429 117 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 FABP5P3A8MUU1 101 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 GAGE7O76087 117 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 GAGE12FP0CL80 117 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 GAGE12GP0CL81 117 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 GAGE12IP0CL82 117 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 TCL1AP56279 114 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 TEX261Q6UWH6 196 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 BAGE2Q86Y30 109 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 C11orf72Q8NBR9 251 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 MUC4Q99102 2169 aa12.25□□□□□ -0.45
CLN3-217ENST00000565354 TRGV1A0A0A0MS02 117 aa12.24□□□□□ -0.45
CLN3-217ENST00000565354 IGLL5B9A064 214 aa12.24□□□□□ -0.45
CLN3-217ENST00000565354 LTAP01374 205 aa12.24□□□□□ -0.45
CLN3-217ENST00000565354 DAZ2Q13117 558 aaKnown RBP12.24□□□□□ -0.45
CLN3-217ENST00000565354 C11orf52Q96A22 123 aa12.24□□□□□ -0.45
CLN3-217ENST00000565354 MED9Q9NWA0 146 aa12.24□□□□□ -0.45
CLN3-217ENST00000565354 PKHD1P08F94 4074 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 RBFOX3A6NFN3 312 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 GNRH2O43555 120 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 TYMSP04818 313 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 RPL35P42766 123 aaKnown RBP12.23□□□□□ -0.45
CLN3-217ENST00000565354 TDRG1Q3Y452 100 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 NHLRC2Q8NBF2 726 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 ZC2HC1AQ96GY0 325 aa12.23□□□□□ -0.45
CLN3-217ENST00000565354 TRGV2A0A075B6R0 118 aa12.22□□□□□ -0.45
CLN3-217ENST00000565354 ORM1P02763 201 aa12.22□□□□□ -0.45
CLN3-217ENST00000565354 ATP5G1P05496 136 aa12.22□□□□□ -0.45
CLN3-217ENST00000565354 FAM162BQ5T6X4 162 aa12.22□□□□□ -0.45
CLN3-217ENST00000565354 LYPD6BQ8NI32 183 aa12.22□□□□□ -0.45
CLN3-217ENST00000565354 MDFICQ9P1T7 246 aa12.22□□□□□ -0.45
CLN3-217ENST00000565354 SH2D1AO60880 128 aa12.21□□□□□ -0.45
CLN3-217ENST00000565354 TOR2AQ5JU69 321 aa12.21□□□□□ -0.45
CLN3-217ENST00000565354 Q6ZTI0 123 aa12.21□□□□□ -0.45
CLN3-217ENST00000565354 SPXQ9BT56 116 aa12.21□□□□□ -0.45
CLN3-217ENST00000565354 DERL1Q9BUN8 251 aa12.21□□□□□ -0.45
CLN3-217ENST00000565354 EIF5A2Q9GZV4 153 aaKnown RBP12.21□□□□□ -0.45
CLN3-217ENST00000565354 MRPL16Q9NX20 251 aaKnown RBP12.21□□□□□ -0.45
CLN3-217ENST00000565354 IGHV3-16A0A0C4DH30 117 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 F5H768 121 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 SPINK4O60575 86 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 S100A4P26447 101 aaKnown RBP12.2□□□□□ -0.46
CLN3-217ENST00000565354 ZNF506Q5JVG8 444 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 PRR27Q6MZM9 219 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 COX8CQ7Z4L0 72 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 PCNPQ8WW12 178 aaKnown RBP12.2□□□□□ -0.46
CLN3-217ENST00000565354 C11orf21Q9P2W6 132 aa12.2□□□□□ -0.46
CLN3-217ENST00000565354 IGHV4-4A0A075B6R2 117 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 B4DEV8 164 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 M0R036 132 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 MGST1P10620 155 aaKnown RBP12.19□□□□□ -0.46
CLN3-217ENST00000565354 GNG4P50150 75 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 CEBPGP53567 150 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 LGALS9BQ3B8N2 356 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 CENPWQ5EE01 88 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 LINC00612Q8N6U2 182 aa12.19□□□□□ -0.46
CLN3-217ENST00000565354 RAB19A4D1S5 217 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 ASIPP42127 132 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 TCTAP57738 103 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 OR5I1Q13606 314 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 ZNF674Q2M3X9 581 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 FAM210AQ96ND0 272 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 NDUFAF3Q9BU61 184 aa12.18□□□□□ -0.46
CLN3-217ENST00000565354 CRIP1P50238 77 aa12.17□□□□□ -0.46
CLN3-217ENST00000565354 RAB14P61106 215 aa12.17□□□□□ -0.46
CLN3-217ENST00000565354 FAM210BQ96KR6 192 aa12.17□□□□□ -0.46
CLN3-217ENST00000565354 FAT2Q9NYQ8 4349 aa12.17□□□□□ -0.46
CLN3-217ENST00000565354 TMSB15BA0A087X1C1 80 aa12.16□□□□□ -0.46
CLN3-217ENST00000565354 IGKV3D-20A0A0C4DH25 116 aa12.16□□□□□ -0.46
CLN3-217ENST00000565354 TMEM250H0YL14 139 aa12.16□□□□□ -0.46
CLN3-217ENST00000565354 M0R2P5 195 aa12.16□□□□□ -0.46
CLN3-217ENST00000565354 DAZAP1Q96EP5 407 aaKnown RBP12.16□□□□□ -0.46
CLN3-217ENST00000565354 MLST8Q9BVC4 326 aa12.16□□□□□ -0.46
CLN3-217ENST00000565354 TMEM88Q6PEY1 159 aa12.15□□□□□ -0.46
CLN3-217ENST00000565354 SMIM12Q96EX1 92 aa12.15□□□□□ -0.46
CLN3-217ENST00000565354 BIN3Q9NQY0 253 aa12.15□□□□□ -0.46
CLN3-217ENST00000565354 DNAH2Q9P225 4427 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 GRIFINA4D1Z8 144 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 KRBOX1C9JBD0 128 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 C9JCJ5 164 aa12.14□□□□□ -0.47
CLN3-217ENST00000565354 IGHV3-53P01767 116 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms