RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 ERCC8Q13216 396 aa12.6□□□□□ -0.39
LINC00554-201ENST00000564841 Q6ZQT7 251 aa12.6□□□□□ -0.39
LINC00554-201ENST00000564841 PLEKHB2Q96CS7 222 aa12.6□□□□□ -0.39
LINC00554-201ENST00000564841 RNF125Q96EQ8 232 aa12.6□□□□□ -0.39
LINC00554-201ENST00000564841 NCBP2LA6PVI3 153 aaKnown RBP12.59□□□□□ -0.39
LINC00554-201ENST00000564841 DLX4Q92988 240 aaPredicted RBP12.59□□□□□ -0.39
LINC00554-201ENST00000564841 SIGLEC9Q9Y336 463 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 PLGLAQ15195 96 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 LRRK2Q5S007 2527 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 ATP5LO75964 103 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 NHLRC4P0CG21 123 aaPredicted RBP12.59□□□□□ -0.39
LINC00554-201ENST00000564841 LOXP28300 417 aaPredicted RBP12.59□□□□□ -0.39
LINC00554-201ENST00000564841 KLHL30-AS1Q8NEE0 82 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 MYOZ3Q8TDC0 251 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 AAMDCQ9H7C9 122 aa12.59□□□□□ -0.39
LINC00554-201ENST00000564841 POLQO75417 2590 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 LGALS1P09382 135 aaKnown RBP12.58□□□□□ -0.4
LINC00554-201ENST00000564841 CFAP161Q6P656 301 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 NXT2Q9NPJ8 142 aaKnown RBP12.58□□□□□ -0.4
LINC00554-201ENST00000564841 IGLV2-18A0A075B6J9 118 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 OR11H12B2RN74 326 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 TEX36Q5VZQ5 186 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 PVRIGQ6DKI7 326 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 OR11H1Q8NG94 326 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 OR11H2Q8NH07 326 aa12.58□□□□□ -0.4
LINC00554-201ENST00000564841 MYMXA0A1B0GTQ4 84 aa12.57□□□□□ -0.4
LINC00554-201ENST00000564841 K7EIM0 57 aa12.57□□□□□ -0.4
LINC00554-201ENST00000564841 AJUBAQ96IF1 538 aa12.57□□□□□ -0.4
LINC00554-201ENST00000564841 A0A087WX48 190 aa12.57□□□□□ -0.4
LINC00554-201ENST00000564841 HERV-K104P63124 156 aa12.57□□□□□ -0.4
LINC00554-201ENST00000564841 PPP1R27Q86WC6 154 aa12.57□□□□□ -0.4
LINC00554-201ENST00000564841 TNFRSF13BO14836 293 aaPredicted RBP12.56□□□□□ -0.4
LINC00554-201ENST00000564841 PRTN3P24158 256 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 GAGE5Q13069 117 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 GAGE6Q13070 117 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 TAL2Q16559 108 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 TCL1BO95988 128 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 VPS13CQ709C8 3753 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 CNIH1O95406 144 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 Q8N8P6 123 aa12.56□□□□□ -0.4
LINC00554-201ENST00000564841 PRAC2D3DTV9 90 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 CCDC179H3BU77 68 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 IGHV1-8P0DP01 117 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 EMP1P54849 157 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 SRSF9Q13242 221 aaKnown RBP eCLIP12.55□□□□□ -0.4
LINC00554-201ENST00000564841 ZNF462Q96JM2 2506 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 TMEM78Q5T7P6 136 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 SMIM20Q8N5G0 67 aa12.55□□□□□ -0.4
LINC00554-201ENST00000564841 B9A039 149 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 SCGB1D4Q6XE38 83 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 CRLF1O75462 422 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 LAGE3Q14657 143 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 ZFAND6Q6FIF0 208 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 ANKRD29Q8N6D5 301 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 PPDPFLQ8WWR9 84 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 CFHR4Q92496 578 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 C11orf21Q9P2W6 132 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 IGHG4P01861 327 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 CRYGBP07316 175 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 TEX29Q8N6K0 151 aa12.54□□□□□ -0.4
LINC00554-201ENST00000564841 LINC01546A6NGU7 62 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 TEN1Q86WV5 123 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 LYPD1Q8N2G4 141 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 PRADC1Q9BSG0 188 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.53□□□□□ -0.4
LINC00554-201ENST00000564841 ZNF815PA8K554 130 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 SLC25A16P16260 332 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 CRIP2P52943 208 aaPredicted RBP12.53□□□□□ -0.4
LINC00554-201ENST00000564841 RNF182Q8N6D2 247 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 PSMG3-AS1Q96PY0 264 aa12.53□□□□□ -0.4
LINC00554-201ENST00000564841 GNLYP22749 145 aa12.52□□□□□ -0.4
LINC00554-201ENST00000564841 DYNAPQ8N1N2 210 aa12.52□□□□□ -0.4
LINC00554-201ENST00000564841 ATP6V0E2Q8NHE4 81 aa12.52□□□□□ -0.4
LINC00554-201ENST00000564841 ONECUT1Q9UBC0 465 aa12.52□□□□□ -0.4
LINC00554-201ENST00000564841 ZNF672Q499Z4 452 aaPredicted RBP12.52□□□□□ -0.41
LINC00554-201ENST00000564841 USP9YO00507 2555 aaPredicted RBP12.52□□□□□ -0.41
LINC00554-201ENST00000564841 TRAV4A0A0B4J268 109 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 IL17RELQ6ZVW7 336 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 NRACQ8N912 160 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 USP24Q9UPU5 2620 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 TRBV7-9A0A0J9YWB2 115 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 CSMD2Q7Z408 3487 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 IGHV3OR16-13A0A075B7E8 117 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 IGHV3-74A0A0B4J1X5 117 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 IGKV3D-20A0A0C4DH25 116 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 ZNF688P0C7X2 276 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 C3orf56Q8N813 242 aa12.51□□□□□ -0.41
LINC00554-201ENST00000564841 IGHV3-66A0A0C4DH42 116 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 F8VRH5 84 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 SMAD5-AS1Q9Y6J3 95 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 CELSR2Q9HCU4 2923 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 HES1Q14469 280 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 TMEM155Q4W5P6 130 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 C1orf122Q6ZSJ8 110 aa12.5□□□□□ -0.41
LINC00554-201ENST00000564841 IGHV1-3A0A0C4DH29 117 aa12.49□□□□□ -0.41
LINC00554-201ENST00000564841 H7C1H1 209 aa12.49□□□□□ -0.41
LINC00554-201ENST00000564841 PLNP26678 52 aa12.49□□□□□ -0.41
LINC00554-201ENST00000564841 PSMG4Q5JS54 123 aa12.49□□□□□ -0.41
LINC00554-201ENST00000564841 UBTD1Q9HAC8 227 aa12.49□□□□□ -0.41
LINC00554-201ENST00000564841 A0A1W2PPR1 153 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms