RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GZMBP10144 247 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 HOXA5P20719 270 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 TSPOP30536 169 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 LEPP41159 167 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 DEFB114Q30KQ6 69 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 LINC01559Q495D7 138 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 ADAMTSL5Q6ZMM2 481 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 ODF3Q96PU9 254 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 TPPP3Q9BW30 176 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 SELENOKQ9Y6D0 94 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 A0A0J9YX75 114 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 A0A1B0GXF2 115 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 CRISP2P16562 243 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 S100A2P29034 98 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 RNASE4P34096 147 aaKnown RBP6.67□□□□□ -1.34
VPS39-207ENST00000563692 FOXI2Q6ZQN5 318 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 FER1L6-AS1Q8NA97 138 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 FAM19A4Q96LR4 140 aa6.67□□□□□ -1.34
VPS39-207ENST00000563692 SPAG8Q99932 426 aaPredicted RBP6.67□□□□□ -1.34
VPS39-207ENST00000563692 F6UB75 175 aa6.66□□□□□ -1.34
VPS39-207ENST00000563692 AKR1D1P51857 326 aa6.66□□□□□ -1.34
VPS39-207ENST00000563692 DEFB121Q5J5C9 76 aa6.66□□□□□ -1.34
VPS39-207ENST00000563692 COA6Q5JTJ3 125 aaKnown RBP6.66□□□□□ -1.34
VPS39-207ENST00000563692 LYZL1Q6UWQ5 148 aa6.66□□□□□ -1.34
VPS39-207ENST00000563692 APRG1Q8IVJ8 170 aa6.66□□□□□ -1.34
VPS39-207ENST00000563692 CMYA5Q8N3K9 4069 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 GRIFINA4D1Z8 144 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 FRMD6-AS1P0C7T7 363 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 Q0VG73 95 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 TWIST1Q15672 202 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 CD300EQ496F6 205 aaPredicted RBP6.65□□□□□ -1.34
VPS39-207ENST00000563692 OR10J3Q5JRS4 329 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 SMIM15Q7Z3B0 74 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 BAGE3Q86Y29 109 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 TMEM61Q8N0U2 210 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 ZFAND2AQ8N6M9 145 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 OR2K2Q8NGT1 345 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 KCNS1Q96KK3 526 aa6.65□□□□□ -1.34
VPS39-207ENST00000563692 TGP01266 2768 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 IGKV3D-20A0A0C4DH25 116 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 KLLNB2CW77 178 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 J3KRW8 73 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 SAP30O75446 220 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 ARMS2P0C7Q2 107 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 IGLC6P0CF74 106 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 S100A4P26447 101 aaKnown RBP6.64□□□□□ -1.35
VPS39-207ENST00000563692 CTRLP40313 264 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 CDKN1BP46527 198 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 DEFB131AP59861 70 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 DEFB1P60022 68 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 CACNG7P62955 275 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 EGFEM1PQ0D2K5 195 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 KIAA1644Q3SXP7 199 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 C9orf66Q5T8R8 295 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 GDF5OSQ5U4N7 250 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 FAM159AQ6UWV7 190 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 GATD1Q8NB37 220 aa6.64□□□□□ -1.35
VPS39-207ENST00000563692 C7orf71A4D174 169 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 K7EIL1 84 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 SRIP30626 198 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 ASIPP42127 132 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 KRTAP10-11P60412 298 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 SLAQ13239 276 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 ZNF493Q6ZR52 646 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 HIST3H2BBQ8N257 126 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 TMEM18Q96B42 140 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 SSBP4Q9BWG4 385 aaPredicted RBP6.63□□□□□ -1.35
VPS39-207ENST00000563692 NAGKQ9UJ70 344 aa6.63□□□□□ -1.35
VPS39-207ENST00000563692 H3BMM0 161 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 IGKV3-20P01619 116 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 OR5AL1P0C617 328 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 MED14OSP0DP75 135 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 HLA-DRB4P13762 266 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 NTF3P20783 257 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 SSTP61278 116 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 ANXA2RQ3ZCQ2 193 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 DNLZQ5SXM8 178 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 PRR9Q5T870 116 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 SPANXN1Q5VSR9 72 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 ALKBH7Q9BT30 221 aaPredicted RBP6.62□□□□□ -1.35
VPS39-207ENST00000563692 CNFNQ9BYD5 112 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 MAP6D1Q9H9H5 199 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 C11orf21Q9P2W6 132 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 HLA-DRB4X5D2U9 266 aa6.62□□□□□ -1.35
VPS39-207ENST00000563692 PRKDCP78527 4128 aaKnown RBP6.61□□□□□ -1.35
VPS39-207ENST00000563692 IGHV4-4A0A075B6R2 117 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 LOC102724200A0A096LPH7 203 aaPredicted RBP6.61□□□□□ -1.35
VPS39-207ENST00000563692 TRAV12-3A0A0B4J271 114 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 KNCNA6PVL3 124 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 OR11H12B2RN74 326 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 SNAI2O43623 268 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 AMBPP02760 352 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 INSL3P51460 131 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 PDZD11Q5EBL8 140 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 GFI1BQ5VTD9 330 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 FAM104BQ5XKR9 115 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 ZNF575Q86XF7 245 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 CLUHP3Q96NS8 147 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 TMEM191AQ9H0A3 160 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 ZNF256Q9Y2P7 627 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 251.4 ms