RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 SSNA1O43805 119 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 PET100P0DJ07 73 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 EVI2AP22794 236 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 FAM74A1Q5RGS3 127 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 TXNDC17Q9BRA2 123 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 TRAV8-1A0A0A6YYK1 113 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 TRAV21A0A0B4J279 112 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 A0A1W2PPV4 95 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 C9JCJ5 164 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 KRTAP10-1P60331 282 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 ACOT6Q3I5F7 207 aaPredicted RBP10.63□□□□□ -0.71
CLK3-211ENST00000563297 PQLC2Q6ZP29 291 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 TREM1Q9NP99 234 aa10.63□□□□□ -0.71
CLK3-211ENST00000563297 TYMSP04818 313 aa10.62□□□□□ -0.71
CLK3-211ENST00000563297 F6UZH7 168 aa10.61□□□□□ -0.71
CLK3-211ENST00000563297 HMGB3O15347 200 aaKnown RBP10.61□□□□□ -0.71
CLK3-211ENST00000563297 CRYGDP07320 174 aa10.61□□□□□ -0.71
CLK3-211ENST00000563297 GATA1P15976 413 aaPredicted RBP10.61□□□□□ -0.71
CLK3-211ENST00000563297 RAB2AP61019 212 aa10.61□□□□□ -0.71
CLK3-211ENST00000563297 GNG5P63218 68 aa10.61□□□□□ -0.71
CLK3-211ENST00000563297 KCNS1Q96KK3 526 aa10.61□□□□□ -0.71
CLK3-211ENST00000563297 SDF2L1Q9HCN8 221 aa10.61□□□□□ -0.71
CLK3-211ENST00000563297 TIRAPP58753 221 aa10.6□□□□□ -0.71
CLK3-211ENST00000563297 SH2D6Q7Z4S9 175 aa10.6□□□□□ -0.71
CLK3-211ENST00000563297 OR10G9Q8NGN4 311 aa10.6□□□□□ -0.71
CLK3-211ENST00000563297 OR10G7Q8NGN6 311 aa10.6□□□□□ -0.71
CLK3-211ENST00000563297 SGK494Q96LW2 274 aa10.6□□□□□ -0.71
CLK3-211ENST00000563297 C10orf126Q8N4M7 172 aa10.59□□□□□ -0.71
CLK3-211ENST00000563297 NHLRC2Q8NBF2 726 aa10.59□□□□□ -0.71
CLK3-211ENST00000563297 ASB13Q8WXK3 278 aa10.59□□□□□ -0.71
CLK3-211ENST00000563297 C11orf21Q9P2W6 132 aa10.59□□□□□ -0.71
CLK3-211ENST00000563297 FAT1Q14517 4588 aa10.58□□□□□ -0.72
CLK3-211ENST00000563297 IGHV3-38A0A0C4DH36 116 aa10.58□□□□□ -0.72
CLK3-211ENST00000563297 ARL14EPLP0DKL9 152 aa10.58□□□□□ -0.72
CLK3-211ENST00000563297 GCSHP23434 173 aa10.58□□□□□ -0.72
CLK3-211ENST00000563297 ZNF80P51504 273 aaPredicted RBP10.58□□□□□ -0.72
CLK3-211ENST00000563297 SLC25A29Q8N8R3 303 aa10.58□□□□□ -0.72
CLK3-211ENST00000563297 VPS13BQ7Z7G8 4022 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 LRCOL1A6NCL2 159 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 FBLL1A6NHQ2 334 aaKnown RBP10.57□□□□□ -0.72
CLK3-211ENST00000563297 RS1O15537 224 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 PFN1P07737 140 aaKnown RBP10.57□□□□□ -0.72
CLK3-211ENST00000563297 STAG3L2P0CL84 134 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 STAG3L3P0CL85 134 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 INAFM2P0DMQ5 153 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 DEFA1P59665 94 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 DEFA3P59666 94 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 ZNF876PQ49A33 203 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 CFAP126Q5VTH2 177 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 DPPA3Q6W0C5 159 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 SUN5Q8TC36 379 aa10.57□□□□□ -0.72
CLK3-211ENST00000563297 SERTM2A0A1B0GWG4 89 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 IBA57-AS1B1ANH7 110 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 CIDEAO60543 219 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 TCRAP04437 139 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 CDC34P49427 236 aaPredicted RBP10.56□□□□□ -0.72
CLK3-211ENST00000563297 PPT1P50897 306 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 LINC01556Q5JQF7 62 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 NDFIP1Q9BT67 221 aa10.56□□□□□ -0.72
CLK3-211ENST00000563297 HERC1Q15751 4861 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 TRBV6-4A0A1B0GX49 114 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 PGPEP1LA6NFU8 196 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 TAAR5O14804 337 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 Q5VSD8 79 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 C5orf17Q8NAS9 161 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 OR2G3Q8NGZ4 309 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 FRZBQ92765 325 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 RAB24Q969Q5 203 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 PRADC1Q9BSG0 188 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 PSG8Q9UQ74 426 aa10.55□□□□□ -0.72
CLK3-211ENST00000563297 IGHV3-73A0A0B4J1V6 119 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 TRAV8-6A0A0B4J262 113 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 PSCAO43653 123 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 GCGP01275 180 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 IGLV2-11P01706 119 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 SMR3BP02814 79 aaPredicted RBP10.54□□□□□ -0.72
CLK3-211ENST00000563297 GCHFRP30047 84 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 SUMO1P63165 101 aaKnown RBP10.54□□□□□ -0.72
CLK3-211ENST00000563297 TMEM75Q8N9X5 138 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 HSD17B11Q8NBQ5 300 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 PTH2Q96A98 100 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 C9orf85Q96MD7 179 aa10.54□□□□□ -0.72
CLK3-211ENST00000563297 K7EQM0 130 aa10.53□□□□□ -0.72
CLK3-211ENST00000563297 RHOHQ15669 191 aa10.53□□□□□ -0.72
CLK3-211ENST00000563297 OR10J3Q5JRS4 329 aa10.53□□□□□ -0.72
CLK3-211ENST00000563297 PSMG3Q9BT73 122 aaPredicted RBP10.53□□□□□ -0.72
CLK3-211ENST00000563297 EPDR1Q9UM22 224 aa10.53□□□□□ -0.72
CLK3-211ENST00000563297 BOLA1Q9Y3E2 137 aa10.53□□□□□ -0.72
CLK3-211ENST00000563297 FLG2Q5D862 2391 aaPredicted RBP10.52□□□□□ -0.73
CLK3-211ENST00000563297 IGLV5-52A0A0A0MRZ9 124 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 RNASE3P12724 160 aaKnown RBP10.52□□□□□ -0.73
CLK3-211ENST00000563297 ATP6V0CP27449 155 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 SERF2P84101 59 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 FLI1Q01543 452 aaPredicted RBP10.52□□□□□ -0.73
CLK3-211ENST00000563297 RGS21Q2M5E4 152 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 SMUG1Q53HV7 270 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 ZNF506Q5JVG8 444 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 LELP1Q5T871 98 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 PRNTQ86SH4 94 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 Q9HAA7 133 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 1270.3 ms