RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 TYMSP04818 313 aa12.41□□□□□ -0.42
SHMT2-225ENST00000556798 S100A9P06702 114 aaKnown RBP12.41□□□□□ -0.42
SHMT2-225ENST00000556798 ZNF415Q09FC8 603 aa12.41□□□□□ -0.42
SHMT2-225ENST00000556798 TDRG1Q3Y452 100 aa12.41□□□□□ -0.42
SHMT2-225ENST00000556798 IBA57Q5T440 356 aaKnown RBP12.41□□□□□ -0.42
SHMT2-225ENST00000556798 SDF2L1Q9HCN8 221 aa12.41□□□□□ -0.42
SHMT2-225ENST00000556798 GAGE12BA1L429 117 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 PDE6DO43924 150 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 GAGE7O76087 117 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 GAGE12FP0CL80 117 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 GAGE12GP0CL81 117 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 GAGE12IP0CL82 117 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 TAGLN2P37802 199 aaKnown RBP12.4□□□□□ -0.42
SHMT2-225ENST00000556798 CRIP1P50238 77 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 DAZ2Q13117 558 aaKnown RBP12.4□□□□□ -0.42
SHMT2-225ENST00000556798 Q6ZTI0 123 aa12.4□□□□□ -0.42
SHMT2-225ENST00000556798 KLK5Q9Y337 293 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-225ENST00000556798 RBFOX3A6NFN3 312 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 SH2D1AO60880 128 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 TOR2AQ5JU69 321 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 COX8CQ7Z4L0 72 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 BAGE2Q86Y30 109 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 LINC00612Q8N6U2 182 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 KCNS1Q96KK3 526 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 MED9Q9NWA0 146 aa12.39□□□□□ -0.43
SHMT2-225ENST00000556798 TRGV1A0A0A0MS02 117 aa12.38□□□□□ -0.43
SHMT2-225ENST00000556798 IGHV3-16A0A0C4DH30 117 aa12.38□□□□□ -0.43
SHMT2-225ENST00000556798 RAB19A4D1S5 217 aa12.38□□□□□ -0.43
SHMT2-225ENST00000556798 FABP5P3A8MUU1 101 aa12.38□□□□□ -0.43
SHMT2-225ENST00000556798 CENPWQ5EE01 88 aa12.38□□□□□ -0.43
SHMT2-225ENST00000556798 ZNF506Q5JVG8 444 aa12.38□□□□□ -0.43
SHMT2-225ENST00000556798 MRPL16Q9NX20 251 aaKnown RBP12.38□□□□□ -0.43
SHMT2-225ENST00000556798 MUC4Q99102 2169 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 IGKV3D-20A0A0C4DH25 116 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 IGLL5B9A064 214 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 M0R036 132 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 SPINK4O60575 86 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 ZNF674Q2M3X9 581 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 FAM162BQ5T6X4 162 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 MLST8Q9BVC4 326 aa12.37□□□□□ -0.43
SHMT2-225ENST00000556798 ORM1P02763 201 aa12.36□□□□□ -0.43
SHMT2-225ENST00000556798 PRR27Q6MZM9 219 aa12.36□□□□□ -0.43
SHMT2-225ENST00000556798 PGPEP1LA6NFU8 196 aa12.35□□□□□ -0.43
SHMT2-225ENST00000556798 ATP5G1P05496 136 aa12.35□□□□□ -0.43
SHMT2-225ENST00000556798 GNG4P50150 75 aa12.35□□□□□ -0.43
SHMT2-225ENST00000556798 FAM210AQ96ND0 272 aa12.35□□□□□ -0.43
SHMT2-225ENST00000556798 EIF5A2Q9GZV4 153 aaKnown RBP12.35□□□□□ -0.43
SHMT2-225ENST00000556798 NACAE9PAV3 2078 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 KMT2CQ8NEZ4 4911 aaKnown RBP12.34□□□□□ -0.43
SHMT2-225ENST00000556798 TRBV20OR9-2A0A075B6H5 130 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 TRGV2A0A075B6R0 118 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 IGHV4-4A0A075B6R2 117 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 TMSB15BA0A087X1C1 80 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 B4DEV8 164 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 F5H768 121 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 IGLV2-8P01709 118 aa12.34□□□□□ -0.43
SHMT2-225ENST00000556798 ALMS1Q8TCU4 4167 aa12.33□□□□□ -0.43
SHMT2-225ENST00000556798 MGST1P10620 155 aaKnown RBP12.33□□□□□ -0.44
SHMT2-225ENST00000556798 CEBPGP53567 150 aa12.33□□□□□ -0.44
SHMT2-225ENST00000556798 LGALS9BQ3B8N2 356 aa12.33□□□□□ -0.44
SHMT2-225ENST00000556798 SPXQ9BT56 116 aa12.33□□□□□ -0.44
SHMT2-225ENST00000556798 GRIFINA4D1Z8 144 aa12.32□□□□□ -0.44
SHMT2-225ENST00000556798 KRBOX1C9JBD0 128 aa12.32□□□□□ -0.44
SHMT2-225ENST00000556798 RNASE3P12724 160 aaKnown RBP12.32□□□□□ -0.44
SHMT2-225ENST00000556798 RPL19P84098 196 aaKnown RBP12.32□□□□□ -0.44
SHMT2-225ENST00000556798 LINC01559Q495D7 138 aa12.32□□□□□ -0.44
SHMT2-225ENST00000556798 TMEM88Q6PEY1 159 aa12.32□□□□□ -0.44
SHMT2-225ENST00000556798 C9orf85Q96MD7 179 aa12.32□□□□□ -0.44
SHMT2-225ENST00000556798 PARLQ9H300 379 aa12.32□□□□□ -0.44
SHMT2-225ENST00000556798 TMEM250H0YL14 139 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 H3BVH4 76 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 M0R2P5 195 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 IGHV3-53P01767 116 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 HOXA5P20719 270 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 S100A4P26447 101 aaKnown RBP12.31□□□□□ -0.44
SHMT2-225ENST00000556798 ASIPP42127 132 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 LYSTQ99698 3801 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 APLNQ9ULZ1 77 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 SACSQ9NZJ4 4579 aa12.31□□□□□ -0.44
SHMT2-225ENST00000556798 OR5I1Q13606 314 aa12.3□□□□□ -0.44
SHMT2-225ENST00000556798 NDUFAF3Q9BU61 184 aa12.3□□□□□ -0.44
SHMT2-225ENST00000556798 DNAH1Q9P2D7 4330 aa12.3□□□□□ -0.44
SHMT2-225ENST00000556798 C9JCJ5 164 aa12.29□□□□□ -0.44
SHMT2-225ENST00000556798 SRP19P09132 144 aaKnown RBP12.29□□□□□ -0.44
SHMT2-225ENST00000556798 IFITM2Q01629 132 aa12.29□□□□□ -0.44
SHMT2-225ENST00000556798 ZNF575Q86XF7 245 aa12.29□□□□□ -0.44
SHMT2-225ENST00000556798 RASL10AQ92737 203 aa12.29□□□□□ -0.44
SHMT2-225ENST00000556798 SMIM12Q96EX1 92 aa12.29□□□□□ -0.44
SHMT2-225ENST00000556798 C18orf15Q96N68 181 aa12.29□□□□□ -0.44
SHMT2-225ENST00000556798 LCE6AA0A183 80 aa12.28□□□□□ -0.44
SHMT2-225ENST00000556798 SFTA3P0C7M3 94 aa12.28□□□□□ -0.44
SHMT2-225ENST00000556798 SRSF3P84103 164 aaKnown RBP12.28□□□□□ -0.44
SHMT2-225ENST00000556798 C9JQL5 133 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 TCTAP57738 103 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 RAB14P61106 215 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 ZNF876PQ49A33 203 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 LINC00476Q8WZB0 136 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 FAM210BQ96KR6 192 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 IL36BQ9NZH7 164 aa12.27□□□□□ -0.45
SHMT2-225ENST00000556798 TRAV26-1A0A087WT03 109 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms