RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 BMI1P35226 326 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 GAGE13Q4V321 117 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 Q6AWC8 147 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 PIFOQ8TCI5 191 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 CFHR4Q92496 578 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 CYSLTR1Q9Y271 337 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 TRBV7-3A0A075B6L6 115 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 A0A1B0GWB2 263 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 SHISA9B4DS77 424 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 DPM2O94777 84 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 LY6DQ14210 128 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 SYT8Q8NBV8 401 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 HIST1H4GQ99525 98 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 MAP1LC3AQ9H492 121 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 LRRK2Q5S007 2527 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 IGKV3D-20A0A0C4DH25 116 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 LINC01546A6NGU7 62 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 NDUFS8O00217 210 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 NBR2O15453 112 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 TGFAP01135 160 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 XGP55808 180 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 NDPQ00604 133 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 RRN3P1Q2M238 152 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 IL17RELQ6ZVW7 336 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 Q8NA96 180 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 UFC1Q9Y3C8 167 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 CELSR2Q9HCU4 2923 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 A0A1B0GV72 72 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 CLEC3BP05452 202 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 SCGB1A1P11684 91 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 MFAP4P55083 255 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 FANCD2OSQ96PS1 177 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 C21orf62Q9NYP8 219 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 HLA-DRB4P13762 266 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 LYPD1Q8N2G4 141 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 NRACQ8N912 160 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 PLEKHB2Q96CS7 222 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 CARD19Q96LW7 228 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 KIR2DL4Q99706 377 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 VKORC1Q9BQB6 163 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 GEMIN7Q9H840 131 aaKnown RBP3.74□□□□□ -1.81
LIMA1-214ENST00000552783 HLA-DRB4X5D2U9 266 aa3.74□□□□□ -1.81
LIMA1-214ENST00000552783 APOMO95445 188 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 IGF1P05019 195 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 FOXI1Q12951 378 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 CFAP161Q6P656 301 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 KLHL30-AS1Q8NEE0 82 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 ZNF418Q8TF45 676 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-214ENST00000552783 SRSF8Q9BRL6 282 aaKnown RBP3.73□□□□□ -1.81
LIMA1-214ENST00000552783 PGPEP1Q9NXJ5 209 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 EMP1P54849 157 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 CFAP126Q5VTH2 177 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 C8orf86Q6ZUL3 223 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 TMEM219Q86XT9 240 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 C8orf31Q8N9H6 132 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 CNFNQ9BYD5 112 aa3.73□□□□□ -1.81
LIMA1-214ENST00000552783 LGALS1P09382 135 aaKnown RBP3.72□□□□□ -1.81
LIMA1-214ENST00000552783 SPINK8P0C7L1 97 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 DEFB1P60022 68 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 SCGB2A2Q13296 93 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 LY6EQ16553 131 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 CLEC19AQ6UXS0 136 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 COX8CQ7Z4L0 72 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 TTC9CQ8N5M4 171 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 Q8N8P6 123 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 ABCA12Q86UK0 2595 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 A0A087WX48 190 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 IGHV7-4-1A0A0J9YVY3 117 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 LINC01549A6NIU2 74 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 C3orf36Q3SXR2 165 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 ANXA2RQ3ZCQ2 193 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 RNF183Q96D59 192 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 NXT2Q9NPJ8 142 aaKnown RBP3.72□□□□□ -1.81
LIMA1-214ENST00000552783 MSRB2Q9Y3D2 182 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 NAV2Q8IVL1 2488 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 LY6LH3BQJ8 138 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 CTSGP08311 255 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 S100A4P26447 101 aaKnown RBP3.72□□□□□ -1.81
LIMA1-214ENST00000552783 SRSF1Q07955 248 aaKnown RBP eCLIP3.72□□□□□ -1.81
LIMA1-214ENST00000552783 C5orf64Q2M2E5 130 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 VMO1Q7Z5L0 202 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 ZNF502Q8TBZ5 544 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 NACAE9PAV3 2078 aa3.72□□□□□ -1.81
LIMA1-214ENST00000552783 IGLV11-55A0A075B6I3 123 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 LOC107984156A0A0G2JMH3 177 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 MYMXA0A1B0GTQ4 84 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 K7ENP7 123 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 TSPAN13O95857 204 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 IGHV3-11P01762 117 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 RPL7P18124 248 aaKnown RBP3.71□□□□□ -1.81
LIMA1-214ENST00000552783 PSMB2P49721 201 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 PDE6HQ13956 83 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 LAGE3Q14657 143 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 C15orf32Q32M92 178 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 TCTEX1D4Q5JR98 221 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 PRR9Q5T870 116 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 Q6ZUT4 128 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 ARL17AQ8IVW1 177 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 RPL39LQ96EH5 51 aaKnown RBP3.71□□□□□ -1.81
LIMA1-214ENST00000552783 MRAP2Q96G30 205 aa3.71□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 293.5 ms