RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NPYP01303 97 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 ZNF56Q15929 161 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 TMEM155Q4W5P6 130 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 LINC01560Q8TB33 94 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 METTL26Q96S19 204 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 TRBV20-1A0A075B6N2 111 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 TIMM23O14925 209 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 IGHV3-11P01762 117 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 IGLC1P0CG04 106 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 BSPH1Q075Z2 132 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 GDF5OSQ5U4N7 250 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 Q6AWC8 147 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 LYPD2Q6UXB3 125 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 SPATA12Q7Z6I5 190 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 OR10J6PQ8NGY7 276 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 ATP6V0BQ99437 205 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 KIR2DL4Q99706 377 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 VGLL1Q99990 258 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 NXT2Q9NPJ8 142 aaKnown RBP4.33□□□□□ -1.72
LIMA1-203ENST00000547825 MRPL35Q9NZE8 188 aaKnown RBP4.33□□□□□ -1.72
LIMA1-203ENST00000547825 CHTOPQ9Y3Y2 248 aaKnown RBP4.33□□□□□ -1.72
LIMA1-203ENST00000547825 EPG5Q9HCE0 2579 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 HIVEP2P31629 2446 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 C2orf70A6NJV1 201 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 FAM106CPP0CH98 169 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 RNASE4P34096 147 aaKnown RBP4.32□□□□□ -1.72
LIMA1-203ENST00000547825 FXYD2P54710 66 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 NDPQ00604 133 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 FAM106AQ4KMX7 169 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 ZFAND6Q6FIF0 208 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 GTSF1Q8WW33 167 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 FXYD5Q96DB9 178 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 MSRB1Q9NZV6 116 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 IGHV3OR16-12A0A075B7B8 117 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 C9JAW5 83 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 C15orf65H3BRN8 121 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 PRB1P04280 392 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 ADIPOQQ15848 244 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 LY6EQ16553 131 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 MRPL51Q4U2R6 128 aaKnown RBP4.32□□□□□ -1.72
LIMA1-203ENST00000547825 SPRNQ5BIV9 151 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 SERTAD4-AS1Q5TG53 156 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 C14orf178Q8N769 122 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-203ENST00000547825 SS18L2Q9UHA2 77 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 A0A1B0GW15 77 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 PROP1O75360 226 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 WISP2O76076 250 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 LTAP01374 205 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 LOXL1Q08397 574 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-203ENST00000547825 FAM104BQ5XKR9 115 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 ZNF474Q6S9Z5 364 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-203ENST00000547825 NEGR1Q7Z3B1 354 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 RNF182Q8N6D2 247 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 C3orf56Q8N813 242 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 Q96MF0 132 aa4.32□□□□□ -1.72
LIMA1-203ENST00000547825 TRAV26-1A0A087WT03 109 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 SCGB1A1P11684 91 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 HLA-DMBP28068 263 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 TMEM249Q2WGJ8 235 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 C10orf126Q8N4M7 172 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 NPFFR1Q9GZQ6 430 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 E7EUB6 86 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 NDUFS7O75251 213 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 C17orf58Q2M2W7 97 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 PATE2Q6UY27 113 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 LINC00322Q6ZN03 302 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-203ENST00000547825 TMEM167AQ8TBQ9 72 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 TNFRSF14Q92956 283 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 DLX4Q92988 240 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-203ENST00000547825 MRAP2Q96G30 205 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 RAB1BQ9H0U4 201 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 MRPL36Q9P0J6 103 aaKnown RBP4.31□□□□□ -1.72
LIMA1-203ENST00000547825 DPM3Q9P2X0 92 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 ARHGAP32A7KAX9 2087 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 SLC25A16P16260 332 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 CTRLP40313 264 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 KLRD1Q13241 179 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 LAGE3Q14657 143 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 NDUFA4L2Q9NRX3 87 aa4.31□□□□□ -1.72
LIMA1-203ENST00000547825 OTOGQ6ZRI0 2925 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 SS18L1O75177 396 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-203ENST00000547825 PPBPP02775 128 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 HLA-DRB4P13762 266 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 LY6DQ14210 128 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 FAM159AQ6UWV7 190 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 FAM231DQ6ZW35 169 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 Q8N976 141 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 NEU4Q8WWR8 484 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-203ENST00000547825 PTH2Q96A98 100 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 GAFA1Q96PS6 74 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 SCRT2Q9NQ03 307 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 HLA-DRB4X5D2U9 266 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 C11orf53Q8IXP5 236 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 ZNF503Q96F45 646 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 TRGV9Q99603 122 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 SIGLEC9Q9Y336 463 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 TRBV25-1A0A075B6N4 114 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 P0C879 139 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 CFHR3Q02985 330 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 EIF4EBP1Q13541 118 aaPredicted RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms