RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TMEM160Q9NX00 188 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 UFC1Q9Y3C8 167 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 CFAP46Q8IYW2 2715 aa10.49□□□□□ -0.73
VPS33A-208ENST00000543633 GLMPQ8WWB7 406 aa10.49□□□□□ -0.73
VPS33A-208ENST00000543633 ITLN2Q8WWU7 325 aaPredicted RBP10.49□□□□□ -0.73
VPS33A-208ENST00000543633 NHP2Q9NX24 153 aaKnown RBP10.49□□□□□ -0.73
VPS33A-208ENST00000543633 ARHGAP32A7KAX9 2087 aa10.49□□□□□ -0.73
VPS33A-208ENST00000543633 A0A1B0GWB2 263 aa10.48□□□□□ -0.73
VPS33A-208ENST00000543633 TOMM6Q96B49 74 aa10.48□□□□□ -0.73
VPS33A-208ENST00000543633 LINC00477Q96M19 166 aa10.48□□□□□ -0.73
VPS33A-208ENST00000543633 F8W1H4 67 aa10.48□□□□□ -0.73
VPS33A-208ENST00000543633 ATP5G2Q06055 141 aa10.48□□□□□ -0.73
VPS33A-208ENST00000543633 TTTY13Q9BZ97 58 aa10.48□□□□□ -0.73
VPS33A-208ENST00000543633 TRBV7-9A0A0J9YWB2 115 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 LINC01549A6NIU2 74 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 IGLL5B9A064 214 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 PPP1R17O96001 155 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 SAA4P35542 130 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 C19orf54Q5BKX5 351 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 C5orf56Q8N8D9 126 aa10.47□□□□□ -0.73
VPS33A-208ENST00000543633 TRBV7-3A0A075B6L6 115 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 TRAV21A0A0B4J279 112 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 H3BVH4 76 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 OVOL1O14753 267 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 RIPPLY3P57055 190 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 FOXI2Q6ZQN5 318 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 ZNF479Q96JC4 524 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 C16orf92Q96LL3 132 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 DPH3P1Q9H4G8 78 aa10.46□□□□□ -0.73
VPS33A-208ENST00000543633 ANKHD1Q8IWZ3 2542 aaKnown RBP10.46□□□□□ -0.73
VPS33A-208ENST00000543633 IGHV3-66A0A0C4DH42 116 aa10.46□□□□□ -0.74
VPS33A-208ENST00000543633 OR11H12B2RN74 326 aa10.46□□□□□ -0.74
VPS33A-208ENST00000543633 SUMO2P61956 95 aaKnown RBP10.46□□□□□ -0.74
VPS33A-208ENST00000543633 MAPKAPK5-AS1Q8N8E1 139 aa10.46□□□□□ -0.74
VPS33A-208ENST00000543633 OR11H1Q8NG94 326 aa10.46□□□□□ -0.74
VPS33A-208ENST00000543633 OR11H2Q8NH07 326 aa10.46□□□□□ -0.74
VPS33A-208ENST00000543633 HIVEP3Q5T1R4 2406 aa10.46□□□□□ -0.74
VPS33A-208ENST00000543633 TRAV26-2A0A0B4J265 109 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 K7ERJ3 54 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 NPFFO15130 113 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 BRI3O95415 125 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 SCGB1A1P11684 91 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 C12orf74Q32Q52 190 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 MOB4Q9Y3A3 225 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 CHTOPQ9Y3Y2 248 aaKnown RBP10.45□□□□□ -0.74
VPS33A-208ENST00000543633 MYMXA0A1B0GTQ4 84 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 G3V318 75 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 J3QR89 54 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 RPL32P62910 135 aaKnown RBP10.45□□□□□ -0.74
VPS33A-208ENST00000543633 APRG1Q8IVJ8 170 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 NEXN-AS1Q8NBZ9 246 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 OR10J6PQ8NGY7 276 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 SCGB3A1Q96QR1 104 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 HIST1H4GQ99525 98 aa10.45□□□□□ -0.74
VPS33A-208ENST00000543633 TMEM238C9JI98 176 aa10.44□□□□□ -0.74
VPS33A-208ENST00000543633 ASIPP42127 132 aa10.44□□□□□ -0.74
VPS33A-208ENST00000543633 EFNA4P52798 201 aa10.44□□□□□ -0.74
VPS33A-208ENST00000543633 PRR9Q5T870 116 aa10.44□□□□□ -0.74
VPS33A-208ENST00000543633 ZFAND2AQ8N6M9 145 aa10.44□□□□□ -0.74
VPS33A-208ENST00000543633 POM121L12Q8N7R1 296 aa10.44□□□□□ -0.74
VPS33A-208ENST00000543633 CACNA1BQ00975 2339 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 TRAV41A0A0B4J266 112 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 TEX48A0A1B0GUV7 120 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 NDUFA4O00483 81 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 RRN3P1Q2M238 152 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 RASL10AQ92737 203 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 H3BUA1 57 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 SOCS3O14543 225 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 NXPH4O95158 308 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 RPL24P83731 157 aaKnown RBP10.43□□□□□ -0.74
VPS33A-208ENST00000543633 FAM19A4Q96LR4 140 aa10.43□□□□□ -0.74
VPS33A-208ENST00000543633 IGHV3OR16-13A0A075B7E8 117 aa10.42□□□□□ -0.74
VPS33A-208ENST00000543633 IGHV3-74A0A0B4J1X5 117 aa10.42□□□□□ -0.74
VPS33A-208ENST00000543633 IGHV1-69DA0A0B4J2H0 117 aa10.42□□□□□ -0.74
VPS33A-208ENST00000543633 GNLYP22749 145 aa10.42□□□□□ -0.74
VPS33A-208ENST00000543633 C20orf173Q96LM9 149 aa10.42□□□□□ -0.74
VPS33A-208ENST00000543633 SPANXB1Q9NS25 103 aaPredicted RBP10.42□□□□□ -0.74
VPS33A-208ENST00000543633 TMEM238LA0A1B0GVL6 79 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 A6NJY4 79 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 ARL3P36405 182 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 LMO4P61968 165 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 IGHV3-49A0A0A0MS15 119 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 LINC01548A6NM66 108 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 PAPPA-AS1Q5QFB9 102 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 GPHB5Q86YW7 130 aa10.41□□□□□ -0.74
VPS33A-208ENST00000543633 RNF223E7ERA6 249 aa10.4□□□□□ -0.74
VPS33A-208ENST00000543633 S100A4P26447 101 aaKnown RBP10.4□□□□□ -0.74
VPS33A-208ENST00000543633 C2orf66Q6UXQ4 117 aa10.4□□□□□ -0.74
VPS33A-208ENST00000543633 BAALCQ8WXS3 180 aa10.4□□□□□ -0.74
VPS33A-208ENST00000543633 PHLDA3Q9Y5J5 127 aa10.4□□□□□ -0.74
VPS33A-208ENST00000543633 LGALS1P09382 135 aaKnown RBP10.4□□□□□ -0.75
VPS33A-208ENST00000543633 USMG5Q96IX5 58 aa10.4□□□□□ -0.75
VPS33A-208ENST00000543633 BBC3Q96PG8 261 aaPredicted RBP10.4□□□□□ -0.75
VPS33A-208ENST00000543633 IGF1P05019 195 aa10.39□□□□□ -0.75
VPS33A-208ENST00000543633 SELENOKQ9Y6D0 94 aa10.39□□□□□ -0.75
VPS33A-208ENST00000543633 IGHV4OR15-8A0A075B7B6 117 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 A0A087WW49 117 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 ANXA2RQ3ZCQ2 193 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 SAMD13Q5VXD3 122 aa10.38□□□□□ -0.75
VPS33A-208ENST00000543633 Q6ZQT7 251 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms