RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 A0A0G2JMM0 328 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 TMEM30CPA0ZSE6 113 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 BBIP1A8MTZ0 92 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 DEGS1O15121 323 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 TPST1O60507 370 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 EDF1O60869 148 aaKnown RBP0.1□□□□□ -2.39
VPS13A-213ENST00000539950 DPM2O94777 84 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 TCRAP04437 139 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 ADCYAP1P18509 176 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 SPINT3P49223 89 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 SPINK7P58062 85 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 DR1Q01658 176 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 PLGLB1Q02325 96 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 KLKP1Q107X0 134 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 OR8B8Q15620 311 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 IDO2Q6ZQW0 420 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 NDUFA11Q86Y39 141 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 OR8I2Q8N0Y5 310 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 OR8J3Q8NGG0 315 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 BRK1Q8WUW1 75 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 PPDPFLQ8WWR9 84 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 MAGOHBQ96A72 148 aaKnown RBP0.1□□□□□ -2.39
VPS13A-213ENST00000539950 LINC00208Q96KT6 92 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 SMIM7Q9BQ49 75 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 MRPL36Q9P0J6 103 aaKnown RBP0.1□□□□□ -2.39
VPS13A-213ENST00000539950 DNAJC15Q9Y5T4 150 aa0.1□□□□□ -2.39
VPS13A-213ENST00000539950 XIRP1Q702N8 1843 aaKnown RBP0.1□□□□□ -2.39
VPS13A-213ENST00000539950 ZCCHC6Q5VYS8 1495 aaKnown RBP0.1□□□□□ -2.39
VPS13A-213ENST00000539950 FANCMQ8IYD8 2048 aa0.09□□□□□ -2.39
VPS13A-213ENST00000539950 MEGF8Q7Z7M0 2845 aa0.09□□□□□ -2.39
VPS13A-213ENST00000539950 IGHV1-24A0A0C4DH33 117 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 TRBV10-1A0A0K0K1A3 114 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 TEX49A0A1B0GTD5 131 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 C9JAW5 83 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 M0QZK8 103 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 SNRNP200O75643 2136 aaKnown RBP0.09□□□□□ -2.4
VPS13A-213ENST00000539950 TNFSF15O95150 251 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 OR2H2O95918 312 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 CD3DP04234 171 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 DBIP07108 87 aaKnown RBP0.09□□□□□ -2.4
VPS13A-213ENST00000539950 HLA-DRB4P13762 266 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 HIST1H1BP16401 226 aaKnown RBP0.09□□□□□ -2.4
VPS13A-213ENST00000539950 SDC4P31431 198 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 CKS2P33552 79 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 AKR1D1P51857 326 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 SNRPD3P62318 126 aaKnown RBP0.09□□□□□ -2.4
VPS13A-213ENST00000539950 PSPHP78330 225 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 C6orf52Q5T4I8 152 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 ZGRF1Q86YA3 2104 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 SLC35B3Q9H1N7 401 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 ATG5Q9H1Y0 275 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 TAS2R8Q9NYW2 309 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 COMMD3Q9UBI1 195 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 HIGD1AQ9Y241 93 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 HLA-DRB4X5D2U9 266 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 ANK1P16157 1881 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 CCDC171Q6TFL3 1326 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 PTPRMP28827 1452 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 LRP5O75197 1615 aa0.09□□□□□ -2.4
VPS13A-213ENST00000539950 CHD3Q12873 2000 aaKnown RBP0.08□□□□□ -2.4
VPS13A-213ENST00000539950 ADGRB1O14514 1584 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 KDM5CP41229 1560 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 OVOS2A0A0J9YW53 1432 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 OVOS2Q6IE36 1432 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 LOC101927531A0A1B0GV80 90 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 A0A1B0GW64 132 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 MCRIP1C9JLW8 97 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 M0R2P5 195 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 CDC42EP2O14613 210 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 YPEL1O60688 119 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 LY6G6CO95867 125 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 TSPAN19P0C672 248 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 KDELR1P24390 212 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 CCDC153Q494R4 210 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 ATP11AUNQ6ZP68 121 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 SLC25A26Q70HW3 274 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 Q86TA4 180 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 TCTE3Q8IZS6 198 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 ATP6V0E2Q8NHE4 81 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 PYDC1Q8WXC3 89 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 VPS25Q9BRG1 176 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 TMEM14BQ9NUH8 114 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 FSIP2Q5CZC0 6907 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 DLEC1Q9Y238 1755 aa0.08□□□□□ -2.4
VPS13A-213ENST00000539950 MAP2P11137 1827 aaKnown RBP0.08□□□□□ -2.4
VPS13A-213ENST00000539950 ZNF142P52746 1687 aaPredicted RBP0.08□□□□□ -2.4
VPS13A-213ENST00000539950 UNC13AQ9UPW8 1703 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 PRG4Q92954 1404 aaPredicted RBP0.07□□□□□ -2.4
VPS13A-213ENST00000539950 KDM6BO15054 1643 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 TRAV12-2A0A075B6T6 113 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 LOC107984156A0A0G2JMH3 177 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 CCDC179H3BU77 68 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 NCR2O95944 276 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 IGKCP01834 107 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 MT-ND4LP03901 98 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 CCKP06307 115 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 PAEPP09466 180 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 PYYP10082 97 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 PCBD1P61457 104 aa0.07□□□□□ -2.4
VPS13A-213ENST00000539950 EMX2Q04743 252 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms