RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PRSS29PA6NIE9 313 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 HMSDA8MTL9 139 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 TYMSP04818 313 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 UBE2G2P60604 165 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 FLI1Q01543 452 aaPredicted RBP10.24□□□□□ -0.77
USP28-204ENST00000537642 FHL2Q14192 279 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 PRNTQ86SH4 94 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 RASL10AQ92737 203 aa10.24□□□□□ -0.77
USP28-204ENST00000537642 NBDYA0A0U1RRE5 68 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 MAP1LC3B2A6NCE7 125 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 FAM74A7A6NL05 159 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 PAX4O43316 350 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 C1orf134Q5TEV5 83 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 LINC00479Q96M42 142 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 MAP1LC3BQ9GZQ8 125 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 SDF2L1Q9HCN8 221 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 C11orf21Q9P2W6 132 aa10.23□□□□□ -0.77
USP28-204ENST00000537642 TRAV34A0A0B4J273 112 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 GCGP01275 180 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 IFNA7P01567 189 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 SFTA3P0C7M3 94 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 FHITP49789 147 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 CRYBA4P53673 196 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 ZNF479Q96JC4 524 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 KCNS1Q96KK3 526 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 UPK3BQ9BT76 320 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 Q9H8V8 135 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 PRO0255Q9UI72 69 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 HHLA3Q9XRX5 114 aa10.22□□□□□ -0.77
USP28-204ENST00000537642 A0A0D9SG52 128 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 FBLL1A6NHQ2 334 aaKnown RBP10.21□□□□□ -0.77
USP28-204ENST00000537642 M0R2P5 195 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 PEX7O00628 323 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 PFN1P07737 140 aaKnown RBP10.21□□□□□ -0.77
USP28-204ENST00000537642 SLAQ13239 276 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 SMUG1Q53HV7 270 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 SOHLH1Q5JUK2 328 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 MRPS16Q9Y3D3 137 aaKnown RBP10.21□□□□□ -0.77
USP28-204ENST00000537642 ICOSQ9Y6W8 199 aa10.21□□□□□ -0.77
USP28-204ENST00000537642 TRGV4A0A0C4DH28 118 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 BCL2L11O43521 198 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 SEC11BP0C7V7 166 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 ZFP69Q49AA0 526 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 SAPCD1Q5SSQ6 148 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 ZNF471Q9BX82 626 aaPredicted RBP10.2□□□□□ -0.78
USP28-204ENST00000537642 NKX6-2Q9C056 277 aaPredicted RBP10.2□□□□□ -0.78
USP28-204ENST00000537642 ARL2-SNX15V9GYD0 113 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 HERC2O95714 4834 aa10.2□□□□□ -0.78
USP28-204ENST00000537642 TRAV4A0A0B4J268 109 aa10.19□□□□□ -0.78
USP28-204ENST00000537642 KANTRA0A1W2PQU2 76 aa10.19□□□□□ -0.78
USP28-204ENST00000537642 HIST1H2BAQ96A08 127 aa10.19□□□□□ -0.78
USP28-204ENST00000537642 PPT1P50897 306 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 TMUB2Q71RG4 321 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 Q86TA4 180 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 C6orf223Q8N319 242 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 OR4C5Q8NGB2 326 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 STOML3Q8TAV4 291 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 KRTAP1-5Q9BYS1 174 aa10.18□□□□□ -0.78
USP28-204ENST00000537642 UMAD1C9J7I0 102 aa10.17□□□□□ -0.78
USP28-204ENST00000537642 MRPL23Q16540 153 aaKnown RBP10.17□□□□□ -0.78
USP28-204ENST00000537642 FAM213BQ8TBF2 198 aa10.17□□□□□ -0.78
USP28-204ENST00000537642 MBD3L1Q8WWY6 194 aa10.17□□□□□ -0.78
USP28-204ENST00000537642 C9orf85Q96MD7 179 aa10.17□□□□□ -0.78
USP28-204ENST00000537642 KIAA1109Q2LD37 5005 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 IGKV3D-20A0A0C4DH25 116 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 C9JCJ5 164 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 K7EQD1 137 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 RNASE3P12724 160 aaKnown RBP10.16□□□□□ -0.78
USP28-204ENST00000537642 ZNF876PQ49A33 203 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 TTC32Q5I0X7 151 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 CST9LP1Q5W188 147 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 SFT2D1Q8WV19 159 aa10.16□□□□□ -0.78
USP28-204ENST00000537642 A0A1B0GV50 99 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 FABP5P3A8MUU1 101 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 PAGE4O60829 102 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 GYPEP15421 78 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 EIF5AP63241 154 aaKnown RBP10.15□□□□□ -0.78
USP28-204ENST00000537642 TNP2Q05952 138 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 LYPD5Q6UWN5 251 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 DPPA3Q6W0C5 159 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 NEGR1Q7Z3B1 354 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 ZC2HC1AQ96GY0 325 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 TCEAL7Q9BRU2 100 aa10.15□□□□□ -0.78
USP28-204ENST00000537642 A0A1W2PPQ1 181 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 PGPEP1LA6NFU8 196 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 RS1O15537 224 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 PFDN1O60925 122 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 NXPH4O95158 308 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 CRIP1P50238 77 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 COX8CQ7Z4L0 72 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 PTH2Q96A98 100 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 FMC1Q96HJ9 113 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 ZFP30Q9Y2G7 519 aa10.14□□□□□ -0.79
USP28-204ENST00000537642 TRBV6-1A0A0K0K1D8 114 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 LOC100131303A0A0U1RQF7 123 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 SIVA1O15304 175 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 ORM1P02763 201 aa10.13□□□□□ -0.79
USP28-204ENST00000537642 TPT1P13693 172 aaKnown RBP10.13□□□□□ -0.79
USP28-204ENST00000537642 GATA1P15976 413 aaPredicted RBP10.13□□□□□ -0.79
USP28-204ENST00000537642 SRIP30626 198 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms